Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18430 273 / 6e-95 Calcium-binding EF-hand family protein (.1.2) AT3G51920 61 / 4e-12 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT3G22930 56 / 3e-10 CML11 calmodulin-like 11 (.1) AT1G24620 49 / 2e-07 EF hand calcium-binding protein family (.1) AT4G16350 49 / 3e-07 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT1G64480 46 / 3e-06 CBL8 calcineurin B-like protein 8 (.1) AT4G01420 45 / 4e-06 CBL5 calcineurin B-like protein 5 (.1) AT5G37770 44 / 6e-06 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT5G24270 43 / 2e-05 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G33000 42 / 5e-05 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022173 [exp] 321 / 2e-114 AT3G18430 257 / 6e-89 Calcium-binding EF-hand family protein (.1.2) Lus10029670 [exp] 268 / 6e-93 AT3G18430 277 / 1e-96 Calcium-binding EF-hand family protein (.1.2) Lus10042708 [exp] 257 / 8e-89 AT3G18430 271 / 4e-94 Calcium-binding EF-hand family protein (.1.2) Lus10001816 [exp] 53 / 1e-08 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 51 / 4e-08 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10011028 [exp] 50 / 1e-07 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10032400 [exp] 50 / 2e-07 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10023069 [exp] 49 / 2e-07 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10038764 [exp] 49 / 4e-07 AT5G55990 375 / 5e-134 calcineurin B-like protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103600 [exp] 300 / 1e-105 AT3G18430 264 / 2e-91 Calcium-binding EF-hand family protein (.1.2) Potri.003G030300 [exp] 276 / 3e-96 AT3G18430 295 / 6e-104 Calcium-binding EF-hand family protein (.1.2) Potri.003G037800 [exp] 51 / 7e-08 AT4G33000 286 / 5e-98 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Potri.005G138000 [exp] 49 / 2e-07 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.011G094900 [exp] 49 / 2e-07 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2) Potri.005G215700 [exp] 49 / 2e-07 AT3G22930 200 / 8e-67 calmodulin-like 11 (.1) Potri.016G003500 [exp] 49 / 3e-07 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.006G002900 [exp] 49 / 3e-07 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.015G013100 [exp] 41 / 0.0001 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 40 / 0.0004 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10010775 pacid=23147705 polypeptide=Lus10010775 locus=Lus10010775.g ID=Lus10010775.BGIv1.0 annot-version=v1.0 ATGGGGAATTCGTCCTCGATGCTGACTCAGTACGACATCGAAGAGGTCCAGGAGCACTGTTATCACGCATTTTCGCAGCAAGAGATAGTCTCGCTGTACC AGAGGTTTTGCCAACTCGATCGCAGCAGTGGTGGGTTTATCTCCGCCGACGAGTTCCTCTCTGTGCCCGAGTTCGCCGTCAATCCTCTCGCTCAGAGACT GCTGAGAACGGTTGATGGATTGAACTTCAAAGAATTCGTTGCTTTCCTGTCTGCATTCAGCCCTCGCGCTACTTTGCAACAGAAAATCGAATTCATCTTT AAGGTATATGATTCGGATGGAAATGGCTCAGTTTCGTTCAAAGAGATGTTGGATGTGTTGCGCGATTTGACCGGACATTTTATATCTGAAGAACAGCGGG AGCAAGTGCTGAATCAGGTCCTTGAAGAAGCAGGTTACACAAAGGACTCGTTATTAGTTTTATCTGACTTTGTAAAGATCCTCGGAAATCACGGCCTGAA GATGGAAGTTGAAGTTCCTGTAGATTAG
AA sequence Show only first row Show all	>Lus10010775 pacid=23147705 polypeptide=Lus10010775 locus=Lus10010775.g ID=Lus10010775.BGIv1.0 annot-version=v1.0 MGNSSSMLTQYDIEEVQEHCYHAFSQQEIVSLYQRFCQLDRSSGGFISADEFLSVPEFAVNPLAQRLLRTVDGLNFKEFVAFLSAFSPRATLQQKIEFIF KVYDSDGNGSVSFKEMLDVLRDLTGHFISEEQREQVLNQVLEEAGYTKDSLLVLSDFVKILGNHGLKMEVEVPVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18430			Calcium-binding EF-hand family...		Lus10010775 [exp]	0	1
AT3G18510			unknown protein		Lus10042971 [exp]	1.7	0.8756
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	2.8	0.8771
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10022566 [exp]	4.0	0.8777
AT1G67170			unknown protein		Lus10019966 [exp]	7.1	0.8698
AT1G29850			double-stranded DNA-binding fa...		Lus10004540 [exp]	9.5	0.8488
AT1G69960		PP2A	serine/threonine protein phosp...		Lus10004252 [exp]	9.8	0.8323
					Lus10024538 [exp]	13.0	0.8350
AT3G18510			unknown protein		Lus10032475 [exp]	14.4	0.8362
AT5G59140			BTB/POZ domain-containing prot...		Lus10016485 [exp]	15.0	0.8478
AT4G35980			unknown protein		Lus10028436 [exp]	15.9	0.8631

Compare expression of checked genes

Lus10010775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.