Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30720 239 / 2e-74 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022174 [exp] 401 / 1e-136 AT4G30720 926 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103700 [exp] 271 / 3e-86 AT4G30720 974 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10010776 pacid=23147697 polypeptide=Lus10010776 locus=Lus10010776.g ID=Lus10010776.BGIv1.0 annot-version=v1.0 ATGGTCGTTTACACTGTACCAACGGATAGTGCAATTCTGCAGGCTATTTCAGCTGAGCTGCAGAATGAGAAACAAGCAATTAATAAATCAATACAAGCTG TTGCTTCAATGTTGCCCGCAAAAGCATTTTCTGTTGTTAGGAAGTCATTTGATGCGAGGAAGGTTCTTAAAGAACCAAAATTTGTGTACACGATGGACAT GGATGTCAGTAAACTTGTTAGTCTAGAGCCCCGAACTGAGGATTTCATATCTGAGCTAGACATAAAGGCTGGACTTATTGACCATATCATAGAAGGAAGA GTAACGGGTGACTTGATCAGTATGATACGAAATGCTAGAAAAGCTGAGGAGCATGAATCTTTTGATGGCGGAGGTAGTGCATCCAATGGAAGTTCAAGGT TGGTGAAGCGTACAAGTCGAGAAAAACCCAAAATTGCAGTTGTGGGCGGCGGTCCTTCTGGCTTGCTTGCTTCTCTTGTTCTTGCTGAGGTTGGTGCAGA TGTTACCTTAATTGAGAGAGGTCAGCCTATCGAACAAAGGGGTCGTGACATTGGCGCTTTGATCCTCAGTAGAATCTTGGAATCTGAAAGTAACTTTTGC ATTGGCGAGGTTGTTTCTTTGCTTAGTCCTGACATTCCTTTCTATCTCTGCGTCTCAGGTGGTGCAGGTACTTGGAGTGATGGGAAGCTCGTAACGAGAA TTGGAAGGAACAGTGAGAGTGTTTTGGCTGCTATGAAAACTTTTGGTTCGCTTTTGTGA
AA sequence Show only first row Show all	>Lus10010776 pacid=23147697 polypeptide=Lus10010776 locus=Lus10010776.g ID=Lus10010776.BGIv1.0 annot-version=v1.0 MVVYTVPTDSAILQAISAELQNEKQAINKSIQAVASMLPAKAFSVVRKSFDARKVLKEPKFVYTMDMDVSKLVSLEPRTEDFISELDIKAGLIDHIIEGR VTGDLISMIRNARKAEEHESFDGGGSASNGSSRLVKRTSREKPKIAVVGGGPSGLLASLVLAEVGADVTLIERGQPIEQRGRDIGALILSRILESESNFC IGEVVSLLSPDIPFYLCVSGGAGTWSDGKLVTRIGRNSESVLAAMKTFGSLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010776 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000682 [exp]	2.6	0.9312
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035485 [exp]	3.2	0.8147
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10032339 [exp]	3.7	0.9312
					Lus10003753 [exp]	4.6	0.9312
AT4G20040			Pectin lyase-like superfamily ...		Lus10008700 [exp]	5.3	0.9312
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	5.7	0.7536
					Lus10030256 [exp]	6.9	0.8081
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10024462 [exp]	7.5	0.8667
AT3G27470			Protein of unknown function (D...		Lus10035228 [exp]	7.7	0.8917
					Lus10020856 [exp]	7.9	0.6993

Compare expression of checked genes

Lus10010776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.