Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30720 321 / 4e-105 PDE327 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022174 [exp] 416 / 8e-142 AT4G30720 926 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10036260 [exp] 0 / 1 AT4G30560 1102 / 0.0 cyclic nucleotide gated channel 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103700 [exp] 331 / 3e-109 AT4G30720 974 / 0.0 PIGMENT DEFECTIVE 327, FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010777 pacid=23147712 polypeptide=Lus10010777 locus=Lus10010777.g ID=Lus10010777.BGIv1.0 annot-version=v1.0 ATGAGCAGTCTCGTTAGTGCAACGGTGACGTTTTGCTCTAGGTGTGTTCGATTTGTTTGCTCAACCGGTTTCCGTTTCGAGGCAGTTGTAACTTTTCGAG GCGGTTGTAACTACTTATTCCCAACAAGGATAACATTTCCTCGAATATGGAGCCAACGGATCGCAGTTGCTATTCCTTCTGCTTGTGTCCTGGTGGACAG GTTGTTCTCACCCGGTACAAATCCTAAAGAGCTATGCATCAACGGCATGCCATTCTCTCGTCGCGCTTCTAAGTGGGCAAATGCTGCTGCTGTCAATGTC TCGAGGCAGGATTTCGAAGCATTCAGCTTTCATGGACCACTTGCAGGAGTTGAGTTTCAGAGGGAATTTGAGCGAAGAGCGGCTGTAATGGGGGAGCAGG AATTTGTTGTCCCTGTGCAGACTGTTACTGACTTTCTGGATGACAAGTTATCAGGAACACCGTTGCCAACATCAAGCTATCGGTTAGGAGTCAAGGCATT CAATCTTCATGAGTTGTTTCCTTCGCATATAACGGAAGCATTGAAGCGTTCAATCTCGATGTTCAACCAAGAGTTACCAGGATTCATTTCCAATGAAGCC CTTCTTCATGGTGTAGAGACGAGAACCAGTTCTCCGGTACAAATTCCACGTGGCAACGAGTCTTACGAGAGTGTATCGTTGAGAGGGCTTTACCCTGTTG GGGAAGGAGCAGGCTATGCAGGTGGGATTGTGAGTGCAGCAGTTGATGGAATGCAAGCTGGATTTACAGTGGCAAACAAGTTTGGTCTGTTACCTCAAGG CATGGACCTGGTCTTGGGGAAAGCAGAGCGGTCCGGATTCGTCAAGTACTAG
AA sequence Show only first row Show all	>Lus10010777 pacid=23147712 polypeptide=Lus10010777 locus=Lus10010777.g ID=Lus10010777.BGIv1.0 annot-version=v1.0 MSSLVSATVTFCSRCVRFVCSTGFRFEAVVTFRGGCNYLFPTRITFPRIWSQRIAVAIPSACVLVDRLFSPGTNPKELCINGMPFSRRASKWANAAAVNV SRQDFEAFSFHGPLAGVEFQREFERRAAVMGEQEFVVPVQTVTDFLDDKLSGTPLPTSSYRLGVKAFNLHELFPSHITEALKRSISMFNQELPGFISNEA LLHGVETRTSSPVQIPRGNESYESVSLRGLYPVGEGAGYAGGIVSAAVDGMQAGFTVANKFGLLPQGMDLVLGKAERSGFVKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10010777 [exp]	0	1
AT4G30030			Eukaryotic aspartyl protease f...		Lus10011612 [exp]	5.4	0.7446
AT3G16180			Major facilitator superfamily ...		Lus10009506 [exp]	11.1	0.6345
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10003281 [exp]	13.6	0.6345
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10023215 [exp]	15.7	0.6345
					Lus10001119 [exp]	16.1	0.6262
AT3G14040			Pectin lyase-like superfamily ...		Lus10023364 [exp]	17.6	0.6345
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10012493 [exp]	18.5	0.5714
					Lus10033149 [exp]	19.3	0.6345
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020441 [exp]	20.8	0.6345
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10019334 [exp]	22.3	0.6345

Compare expression of checked genes

Lus10010777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.