Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30710 256 / 3e-77 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 243 / 8e-73 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 180 / 2e-49 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 174 / 4e-47 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 153 / 8e-43 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT3G60000 121 / 1e-29 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 115 / 1e-27 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT2G20815 100 / 2e-22 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 98 / 7e-22 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30740 63 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010779 [exp] 820 / 0 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10022176 [exp] 786 / 0 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 186 / 3e-52 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 187 / 1e-51 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 179 / 5e-49 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 136 / 3e-37 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 131 / 1e-32 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 125 / 1e-30 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039786 [exp] 119 / 2e-28 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G181700 [exp] 286 / 3e-89 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.018G103800 [exp] 284 / 3e-88 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.014G017500 [exp] 201 / 8e-57 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 199 / 4e-56 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 184 / 9e-51 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 182 / 3e-50 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 135 / 3e-34 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 126 / 3e-31 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 107 / 5e-25 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 101 / 2e-22 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [flax] [poplar] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Lus10010780 pacid=23147694 polypeptide=Lus10010780 locus=Lus10010780.g ID=Lus10010780.BGIv1.0 annot-version=v1.0 ATGGACGATAAGGTAACAACAACAGCCAGTATTTCTAATAGGAGGCTCAGCATTGGTGGTAAGTTGCCGGAGGGTTTATGGCCGTCTACAATGAGAAGCC TTAGTGTGTCTTTTCAGTCTGATAGCATTTCAGTTGCTGTGAGCAAGAAGGAAAAGGAGAAGCCATTGATTAGTAGTAGCAGTAGTAATGTTGTATCGTT AAGTGATAGAACCCTAAAGCCATCTTCAAATGTCGCAAAGATTCGTGTGGACTCTCCGAGGAGAAGCAGCCCTGTGAAAGGTAGGAGTGAGAATGCTAAA CCATCATTAGTAGATAGTTTCCAAACGAAGTTGATTGATCAGCATAGATGGCCAAGTAGGATAACTAGTGTGAAAGCTATGAACAAGAGTGTTGATCTTA GTGATTTTAAGTCGATGAGCGGGTTAGCAACTTCGGTCGTTTCAATCGGGACATCCACGCTGAAGAAAATGCCTGGACATGATGACATTGGGGATGGTGG TAGTAGGCTGCCATTGCAGAAACCGGCTAGAGATGCTGCTACTAGACTACTATCTCCTGAGGAAAAGCCCGGTATGAAGGCGTTTGATGAGGTTTTGGAG CGGTTGTCAAGGGCTGAGAAGTTGGTTTCGGCGCATTTGGTTGATAGGATAGCGTCGCTTCCCTCGGTGAAGACACATTCAGTGCCTAGTCCTAGGTCGC GTCCAGCTTCTCCAAGCAAGGTTTCACTGAGTAGAGGTGGGAGTCCTTCTCGAACAAGACCATCAACTCCCACTTCTTCTCGAGGGGTTAGTCCATCTCG AGCTAGGACATCATCGTCGAGTCCATTGTCATTCAGTTCGAACTCTGTGCTCAGTTTCGTAGCCGATTATAAGAGAGGAAAGAGGAGTGCTAGCTACCTT GAGGACGCTCATCAGTTGAGGCTACTGCACAATCGGTATCTGCAATGGAGATTTGCTAATGCTCAACAGGAAGATGTTCTTTATGCCCAGAAAATGAACA CCGGGAGAACGTTATGTGATGTTTGGAACGGCACATCATCTTTGTGGGATTCAGTAATTAGGAAGAGAATTGATCTACAGAGGCTAAAGCTGGACCTTAA GCTAACTGCAATTTTAAATGGCCAGATGGAATACCTAGAAGATTGGGGTTTAGTTGAGAGAGACCATGTAAGCTCTTTATCTGGAGCTGTAGAGGATCTT GAGGCAAGCACACTCCGACTTCCGTTGGCCGGAGGAGCAAAGGCTGATATAGAATCGCTAAAGCTTGCTGTTTGCTCGGCAGTCGATGTGATGCAAGCAA TGGGATCTTCCATTTGTTATTTACTTTCCAAGGCCGAGGCAATGAACCAGTTCGTTACAGATCTTGCCATTATTGCAGCACGGGAGAAATCGATACTTGC TGAGTGCGAAAGCCTATTGGCATCAACAGCAGCCATGCAGTTACTTGCTTTTGTACCGAGCAAAAAACACGAAAGGAAACCCTACAATGACAATCTGATT GTTCAGGTGGAAGAGGGCAGTATTAGGACGCATCTGATTCAAATGAGACAGATTCTGGAAAACCAAGCAATGTTGACTACAAGAACACATCAATGGTGGT CTTAA
AA sequence Show only first row Show all	>Lus10010780 pacid=23147694 polypeptide=Lus10010780 locus=Lus10010780.g ID=Lus10010780.BGIv1.0 annot-version=v1.0 MDDKVTTTASISNRRLSIGGKLPEGLWPSTMRSLSVSFQSDSISVAVSKKEKEKPLISSSSSNVVSLSDRTLKPSSNVAKIRVDSPRRSSPVKGRSENAK PSLVDSFQTKLIDQHRWPSRITSVKAMNKSVDLSDFKSMSGLATSVVSIGTSTLKKMPGHDDIGDGGSRLPLQKPARDAATRLLSPEEKPGMKAFDEVLE RLSRAEKLVSAHLVDRIASLPSVKTHSVPSPRSRPASPSKVSLSRGGSPSRTRPSTPTSSRGVSPSRARTSSSSPLSFSSNSVLSFVADYKRGKRSASYL EDAHQLRLLHNRYLQWRFANAQQEDVLYAQKMNTGRTLCDVWNGTSSLWDSVIRKRIDLQRLKLDLKLTAILNGQMEYLEDWGLVERDHVSSLSGAVEDL EASTLRLPLAGGAKADIESLKLAVCSAVDVMQAMGSSICYLLSKAEAMNQFVTDLAIIAAREKSILAECESLLASTAAMQLLAFVPSKKHERKPYNDNLI VQVEEGSIRTHLIQMRQILENQAMLTTRTHQWWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010780 [exp]	0	1
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10010779 [exp]	1.0	0.9557
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10030450 [exp]	2.4	0.8754
AT1G45207			Remorin family protein (.2)		Lus10009750 [exp]	6.0	0.8647
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	9.8	0.8345
AT3G16060			ATP binding microtubule motor ...		Lus10011449 [exp]	10.4	0.8678
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10021592 [exp]	11.8	0.8256
AT3G01720			unknown protein		Lus10022320 [exp]	14.0	0.8131
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	15.0	0.8301
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	18.0	0.8459
AT4G36640			Sec14p-like phosphatidylinosit...		Lus10023956 [exp]	18.8	0.7576

Compare expression of checked genes

Lus10010780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.