Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 870 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 739 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT4G30680 230 / 1e-69 Initiation factor eIF-4 gamma, MA3 (.1) AT1G62410 189 / 4e-55 MIF4G domain-containing protein (.1) AT3G60240 168 / 1e-42 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 74 / 1e-13 HEAT/U-box domain-containing protein (.1) AT5G63190 70 / 4e-12 MA3 domain-containing protein (.1.2) AT3G48390 69 / 9e-12 MA3 domain-containing protein (.1) AT4G24800 68 / 2e-11 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT1G22730 54 / 3e-07 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022168 [exp] 1350 / 0 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 707 / 0 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035813 [exp] 700 / 0 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 288 / 4e-93 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10042856 [exp] 215 / 5e-58 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10028156 [exp] 199 / 9e-53 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 143 / 4e-37 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10018085 [exp] 57 / 6e-08 AT4G24800 995 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10011324 [exp] 56 / 1e-07 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 1037 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 1021 / 0 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 888 / 0 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 863 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 189 / 2e-49 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 187 / 1e-48 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.012G091900 [exp] 66 / 1e-10 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.015G088300 [exp] 66 / 1e-10 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.005G199200 [exp] 56 / 1e-07 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02854 [flax] [poplar] MIF4G MIF4G domain CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10010782 pacid=23147700 polypeptide=Lus10010782 locus=Lus10010782.g ID=Lus10010782.BGIv1.0 annot-version=v1.0 ATGCAGCAAGGTGATCAAACGGTGTTAAGCTTGAGGCCTGGTGGTGGTCGAGGAGGCAGCAGCAGATTCTTCAACCCACGTTCGGATTTTTCCAACAATT CCTCTGCCGCCGCTGCTGGTGATCTTCCCCGCCCTCATGGCGGCGCTTCTTTCTTCAAGACTGGCGACTTGCGCTTCGAGGGTCGTGAGCGGTTGCGCTA CACCAGGGAGCAGCTATTGAAGATTAAAGAGACTGTTGTGGTCTCCGATGAGGTTATGAAAATCAAACAAGAGATTGACACTGAGCTTTTCGGTGAAGAG CAAAGCTGGAGTTGTGGAGAGAGCAACCCACCAACTCAACAACCCCAACAACCTCAGGGTCGTTATTCTGAGCCGGACACTCGTGACTGGCGTACTCGTT CGACGCAGCTTCCTAGTCCTGCTCCAGGTGAAGAGAGGTCTTGGGACTCTATCAAAGATAGAGATTTCGGAGGGCGGAATGATTCTAGGAAGCCTGAAGG AAATCAATTCAATCGTCAAGATCAGCTCAATTCTCAATTCTCCCGGGCACAAATATCTTCAAATCAGTCGGGTGGTCCTCCTCCCACCTTGGTGAAAGCT GAGATGCCATGGTCAGCTAGGCGAGCCACTCTTTCTGATAAAGACCGCGTCTTAAAGACTGTGAAGGGTATTCTCAACAAGCTTACTCCTGAAAAGTTTG ATCTTCTGAAAGGCCAACTTATCGACTCAGGCATCACATCAGCTGATATTTTGAAGGCTACTGTGCTGGAGCCCACATTTTGTCCCATGTATGCGCAGCT CTGTTCTGACCTTAATGAAAAGCTTCCTCCATTCCCTTCAGATGAGCCTGGTGGGAAAGAAATAACATTCAAGAGAGTCCTCTTGAACAATTGCCAAGAG GCGTTTGAGGGTGCTGATAAACTAAGGGAAGAAGTGATGCAATTGACGGCCCCAGATCAGGAGCTTGAGCGTAAGGACAAGGAAAGGATGGCGAAGCTTC GTACCCTTGGAAACATACGCTTGATTGGTGAGCTTTTAAAACAGAAGATGGTTCCTGAAAAGATTGTTCATCACATTGTTCAGGAGCTACTGGGTGCTGA TAATAAGATTTGTCCTGCAGAAGAGAATGTCGAAGCCATATGTCATTTCTTCAATACAATCGGCAAGCAGCTTGATGAGGGACCAAAGTCTCGACGAATC AATGATCTGTACTTTGGCCGTTTGAAAGAGCTCGCTTCGAATCCTCAACTGGCTTCACGTCTGAGGTTCATGGTTAGGGATGTTATTGATCTGCGATCAA ACAACTGGGTTCCTAGGCGTGAGGAGGTCAAAGCCAAAACCATAACTGAGATACATTCGGATGCAGAAAAGATGCTTGGTTTACGTCCAGGTGCTACTGC AAGTATGAGAAATAATCGGGTTGTTTCTGCTGCTCCTGGAGTTGGCCAGCCTGGTGGCTTTTCCATCAACAGACCTGGGGCTGGGGGCATGATGCCTGGA ATGCCAGGAACAAGGAGAATGCCTGGTATGCCTGGAATTGATCCCGATAACTGGGAGATACCCAGGAGATCAACGCCAAGGGGTGAAGCTCAGAATGTTC AGCCAGTGGGACGTGTTCAACCGCCGTTGTTCAATAAGTCGACATCAATGAACACAAAGTACTTACCTCAAGGTAGTGGTGGCTTCATAAGTGGGAAAAG TACCGTGCTTTTGCAAGGAAGCGCTGCTCCTGCTCCTACTCGTACTGAGCCCCTTGCTCAAAGTCCTCTACCTGGAAGGGTTTCTCCAGTCGCCGAAAAA CCAGCTGCTGCTCCAGCTGGGAAGATGAATGTCGATGAACTCAAGAGGAAAACTGTCTCGATCTTGAAAGAATACTTCAGCATCATAATCCTTGACGAAG CATTGCAATGCATCGAGGAGCTGAAGACTCCAGCCTACCATTCTGAATTTGTCAAGGAAGCCATTGCTCTTGGTCTCGAGGAGAACCCTCCTTGTGTGGA ACCCGTAATCAAGCTCCTTGAATACTTGTCAGAAAAGAAGGTATTCACCACCCGTGACATAGGAACCGGTTGTTTGCTATATGGGACCATGTTGGATGAC ATTGGCATTGACCTGCCGAGAGCACCAAACAACTTTGGTGAGATTGTCGGGAAGCTTATCCTGGCTGGTATACTCGACTTCAAAGCTGTTGCAGAGATAC TGAAGAAAATGGAGGATGACATGTACCAGAAAGCAGTTTTGGAGGCAGCAGTGAAGACTATCAAATCTAGCTCCCAACAAGGTATACTAGATTCGCAGGC TGCAGATATCGAGGCTTGCCAGAGTTTGTTCCAGTAA
AA sequence Show only first row Show all	>Lus10010782 pacid=23147700 polypeptide=Lus10010782 locus=Lus10010782.g ID=Lus10010782.BGIv1.0 annot-version=v1.0 MQQGDQTVLSLRPGGGRGGSSRFFNPRSDFSNNSSAAAAGDLPRPHGGASFFKTGDLRFEGRERLRYTREQLLKIKETVVVSDEVMKIKQEIDTELFGEE QSWSCGESNPPTQQPQQPQGRYSEPDTRDWRTRSTQLPSPAPGEERSWDSIKDRDFGGRNDSRKPEGNQFNRQDQLNSQFSRAQISSNQSGGPPPTLVKA EMPWSARRATLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKATVLEPTFCPMYAQLCSDLNEKLPPFPSDEPGGKEITFKRVLLNNCQE AFEGADKLREEVMQLTAPDQELERKDKERMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGADNKICPAEENVEAICHFFNTIGKQLDEGPKSRRI NDLYFGRLKELASNPQLASRLRFMVRDVIDLRSNNWVPRREEVKAKTITEIHSDAEKMLGLRPGATASMRNNRVVSAAPGVGQPGGFSINRPGAGGMMPG MPGTRRMPGMPGIDPDNWEIPRRSTPRGEAQNVQPVGRVQPPLFNKSTSMNTKYLPQGSGGFISGKSTVLLQGSAAPAPTRTEPLAQSPLPGRVSPVAEK PAAAPAGKMNVDELKRKTVSILKEYFSIIILDEALQCIEELKTPAYHSEFVKEAIALGLEENPPCVEPVIKLLEYLSEKKVFTTRDIGTGCLLYGTMLDD IGIDLPRAPNNFGEIVGKLILAGILDFKAVAEILKKMEDDMYQKAVLEAAVKTIKSSSQQGILDSQAADIEACQSLFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	0	1
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	1.7	0.9603
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	2.0	0.9506
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	4.9	0.9265
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	5.3	0.9234
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	6.7	0.9381
AT4G16180			unknown protein		Lus10017062 [exp]	8.9	0.9256
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	9.5	0.9339
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	10.4	0.9256
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	10.7	0.9285
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	11.5	0.9358

Compare expression of checked genes

Lus10010782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.