Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57880 332 / 7e-112 MPS1, ATPRD2 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 2, multipolar spindle 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022167 [exp] 100 / 6e-26 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G182301 [exp] 217 / 8e-70 AT5G57880 236 / 2e-77 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 2, multipolar spindle 1 (.1) Potri.006G182201 [exp] 161 / 3e-48 AT5G57880 82 / 6e-19 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 2, multipolar spindle 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010784 pacid=23147713 polypeptide=Lus10010784 locus=Lus10010784.g ID=Lus10010784.BGIv1.0 annot-version=v1.0 ATGGCCACGAGCAATCCCAAGTCACAAGATGCAACCACCACGTCGTTAAGGGACGAGCCACTGAAGCTCGCAGTCGCCATCTCTCTTATCCGGTCGAAGC TCCGCCATTCGCAGCAACCACCCCCACTACCATCAGAACCTTATTCCGTCTCCGATGCACTGCGGTGGAAGCGAAAGGCGAAGGATCGAAAACAGGAGAT TATCCGATTAAGAGAAGACCTCAAGGAAGCCGAAGATGCTTCTTCTAAGTGCGATCTGTTTCCTCAAACCGCCGCGTGCAAGTGTTACTTGTTCGATGAT TTAGGGAAATTCCGCTCCCAGTACGCCGGAGACGGCTCCGACTCTAGATTCAAAGATGTCTCGCGGAGACGATTCTTCAGACAAGTGAGGATAAAGCAAA GGGCACGAAAGAGAGACGATCCTAATCTTCGACTGCGGTTTCCAGATCTGAACAGTGAGAATGAAGTGGATCAGCTTAGGGCTTCCGTTGATTTTCTTGT GGAAATCTGCGACGGCACTGCATCCCCGACGGAGGAAGCTCATTTTGCAAACTGGTCTCACCAGGCTGTTGATTTCATTTTAGAGTCGCTTAGGAAAATA TTACAGCTTAGGGAGAAAATGAAACTAATTGAAGGAATTGTTAGTAGCTTAATTATGCGTCTCCTTAGAAGGATCTGTTCCCCTTCACATCGACAAGATG CGAGTCACATTGGCAGTAATTACCAGTCCCAAGTCCAGCACTTGCTTCGAAAGCTTGGAAGTGAATGCTTCATTGGACAGCGTACACTTCTTTCAGTGTG CGAAAGGGTTTCCATGATAGCTGAAAATCTGCTCTTCATAGACCCATTTGACGAAACCTTCCCAAACATTCACCAGTCTCTTTACATTATGATCCAGCTG CTTGAATTTCTTATATTGGACTACGTGCCAGCATGGTCAAGTTCTCAATGGTTTGATAACGTGCTGCTAGAAGAGTGGGTGACGTCGTTTCTCCATGCTA GGAAAGCACTGCAGCTTCTGGAGAGTAGACATGGGCTTTATGCACTGTACATGGATCGAGTTGCTAATGAGCTAGCTAAGCAAGTTTGCCAAGTTTCATC ATTACAGAAGCTTAACCAACAGCTCCTTCTGGATCTATTCAACTGA
AA sequence Show only first row Show all	>Lus10010784 pacid=23147713 polypeptide=Lus10010784 locus=Lus10010784.g ID=Lus10010784.BGIv1.0 annot-version=v1.0 MATSNPKSQDATTTSLRDEPLKLAVAISLIRSKLRHSQQPPPLPSEPYSVSDALRWKRKAKDRKQEIIRLREDLKEAEDASSKCDLFPQTAACKCYLFDD LGKFRSQYAGDGSDSRFKDVSRRRFFRQVRIKQRARKRDDPNLRLRFPDLNSENEVDQLRASVDFLVEICDGTASPTEEAHFANWSHQAVDFILESLRKI LQLREKMKLIEGIVSSLIMRLLRRICSPSHRQDASHIGSNYQSQVQHLLRKLGSECFIGQRTLLSVCERVSMIAENLLFIDPFDETFPNIHQSLYIMIQL LEFLILDYVPAWSSSQWFDNVLLEEWVTSFLHARKALQLLESRHGLYALYMDRVANELAKQVCQVSSLQKLNQQLLLDLFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57880		MPS1, ATPRD2	ARABIDOPSIS THALIANA PUTATIVE ...		Lus10010784 [exp]	0	1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10000929 [exp]	8.5	0.8355
					Lus10018751 [exp]	14.7	0.7779
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	15.6	0.8521
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	16.7	0.8351
AT3G63240			DNAse I-like superfamily prote...		Lus10006904 [exp]	18.8	0.8338
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	27.0	0.8237
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10027300 [exp]	28.6	0.7446
AT1G44760			Adenine nucleotide alpha hydro...		Lus10025644 [exp]	32.6	0.8170
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	38.7	0.8276
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	49.3	0.8214

Compare expression of checked genes

Lus10010784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.