Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48930 433 / 4e-150 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT5G57840 366 / 1e-123 HXXXD-type acyl-transferase family protein (.1) AT2G19070 290 / 8e-94 SHT spermidine hydroxycinnamoyl transferase (.1) AT5G41040 234 / 2e-72 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) AT3G48720 220 / 3e-67 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G03390 189 / 5e-55 HXXXD-type acyl-transferase family protein (.1) AT1G65450 186 / 6e-54 HXXXD-type acyl-transferase family protein (.1.2.3) AT1G27620 168 / 3e-47 HXXXD-type acyl-transferase family protein (.1) AT5G17540 143 / 6e-38 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022163 [exp] 849 / 0 AT5G48930 449 / 2e-156 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10037266 [exp] 414 / 2e-142 AT5G48930 365 / 4e-123 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026123 [exp] 405 / 4e-139 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10002321 [exp] 391 / 1e-133 AT5G48930 639 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10026097 [exp] 355 / 2e-119 AT5G48930 599 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10001282 [exp] 305 / 8e-99 AT2G19070 501 / 3e-175 spermidine hydroxycinnamoyl transferase (.1) Lus10021394 [exp] 272 / 1e-86 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1) Lus10005358 [exp] 269 / 2e-85 AT2G19070 471 / 2e-164 spermidine hydroxycinnamoyl transferase (.1) Lus10012552 [exp] 260 / 2e-82 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104700 [exp] 495 / 2e-174 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G105500 [exp] 467 / 1e-163 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.001G042900 [exp] 454 / 3e-158 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 452 / 8e-158 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028100 [exp] 421 / 5e-145 AT5G48930 509 / 5e-180 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G028000 [exp] 419 / 3e-144 AT5G48930 504 / 6e-178 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.006G165200 [exp] 308 / 4e-101 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 288 / 4e-93 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.015G100800 [exp] 244 / 2e-76 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 240 / 1e-74 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10010786 pacid=23147711 polypeptide=Lus10010786 locus=Lus10010786.g ID=Lus10010786.BGIv1.0 annot-version=v1.0 ATGAAGGTAACGGTGAAGGAGACGACCATCGTCCGGCCGCAGTCGGAAACCCCACGGCGCAGTATATGGCTGTCCAACATGGATCTCCTACACGGCCGGA TCCACCTCCCTACCATCTACCTCTACAAGCCCGACGGCTCCGCTGACTTCTTCGACTCCAAATCTCTCAAGGATGCTCTCTCTAAGCTCCTAGTCACCTT TTACCCTGCCGCCGGGAGGCTCTCCAAGGACGAGAAAGGCAGGATCGAGATCAACTGCAATGGCGAAGGCGTCCTGTTCCGTGAAGCTGAGACGGATCTC AAAATGTCTGACCTTGGAGAGTTCATGCCTGGGACTGACCTTCTTCAGTTCGTGCCTAGAGTTGACTACTCTGCTGGCATTTCTTCTTACCCTCTTTTCA TCAGTCAGGTAACGAGATTCTCATGCGGAGGAGTATGCGTGGGAACCGGCTGGCACCACACTGTGGCTGATGGGGAAGGCGCGTTGAGCTTCATCAACGC CTGGTCCGACGTGGCACGTGGGAAACCGGTGCTGGTCCAACCGTTCCTTGACCGAACCCTTCTCAAAGCCCGATCCCCACCCAGCCCAAAGTTTGACCAC CTGGAGTACGCCCCACCGCCGTCAATGATAACCGGGGAAGAGAAAAAGGAAGATGAATCGACATCCATGGCCATCTTTCAGATCACACTCGACCAAATCA ACAGCCTGAAAGAGCGAGTCAACAGAGACAACGATTCCAAGACCAAGTACAGCACCTACCAGATCTTGACCTCCCACATTTGGCGCGCCGTCACCAAGGC CCGCGACCTCCCCGCCGAACAGCCGACTAAGCTCCACATCTCCACCGACGGAAGGACTCGCCTCAATCCTCCGCTTGCCAAAGGATACCTCGGCAATTGC GTCTTCCACGCCACGCCCATCGCCACATCGGGAGATCTGTTGTCTGAGCCGCTGATCCGGACCGTGGACCGGATCCACGACGCGATCAAGAGGATGGACG ACGAGTACCTGAGATCCGCCATCGATTATTTGGAAGATCCGAACGACTCGTCTGCGATAATGCAGGTTCCGGGGACTTGCAGGACGCCGAATCTGAAGAT TATTAGCTGGATGCGGCTGCCATTTGAGTGCGCTGATTTCGGATGGGGGAAGCCGATTTTTAACAGGCCGGCGAATCTTTTCGAAGGGAAAGGGAATATC TTGCCCAAGTACAGCGTCGACGGGAATCTGTCGCTGGCGCTCTGCTTGGAGACTTACGCCATGGAGAATTTCAGGAAGACCTTTTACGATGTCACTGTGT GA
AA sequence Show only first row Show all	>Lus10010786 pacid=23147711 polypeptide=Lus10010786 locus=Lus10010786.g ID=Lus10010786.BGIv1.0 annot-version=v1.0 MKVTVKETTIVRPQSETPRRSIWLSNMDLLHGRIHLPTIYLYKPDGSADFFDSKSLKDALSKLLVTFYPAAGRLSKDEKGRIEINCNGEGVLFREAETDL KMSDLGEFMPGTDLLQFVPRVDYSAGISSYPLFISQVTRFSCGGVCVGTGWHHTVADGEGALSFINAWSDVARGKPVLVQPFLDRTLLKARSPPSPKFDH LEYAPPPSMITGEEKKEDESTSMAIFQITLDQINSLKERVNRDNDSKTKYSTYQILTSHIWRAVTKARDLPAEQPTKLHISTDGRTRLNPPLAKGYLGNC VFHATPIATSGDLLSEPLIRTVDRIHDAIKRMDDEYLRSAIDYLEDPNDSSAIMQVPGTCRTPNLKIISWMRLPFECADFGWGKPIFNRPANLFEGKGNI LPKYSVDGNLSLALCLETYAMENFRKTFYDVTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	0	1
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	1.0	0.9736
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	2.4	0.9664
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	3.0	0.9534
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	3.0	0.9653
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	3.7	0.9488
AT2G16250			Leucine-rich repeat protein ki...		Lus10023570 [exp]	5.6	0.9371
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	7.3	0.9591
					Lus10023559 [exp]	7.4	0.9508
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	7.7	0.9471
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	8.4	0.9605

Compare expression of checked genes

Lus10010786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.