Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50760 108 / 3e-29 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 102 / 1e-26 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G02720 75 / 1e-16 GATL5 galacturonosyltransferase 5 (.1.2) AT3G28340 74 / 2e-16 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 74 / 2e-16 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 74 / 3e-16 GATL3 galacturonosyltransferase-like 3 (.1) AT1G24170 71 / 4e-15 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G70090 71 / 5e-15 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT4G02130 68 / 4e-14 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 63 / 2e-12 GATL7 galacturonosyltransferase-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016301 [exp] 149 / 8e-45 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10016302 [exp] 134 / 9e-42 AT3G50760 94 / 1e-24 galacturonosyltransferase-like 2 (.1) Lus10018801 [exp] 116 / 7e-32 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 115 / 9e-32 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010727 [exp] 76 / 8e-17 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10041489 [exp] 74 / 2e-16 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10029215 [exp] 74 / 3e-16 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10000262 [exp] 74 / 3e-16 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10010025 [exp] 74 / 4e-16 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132900 [exp] 109 / 2e-29 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G040300 [exp] 108 / 3e-29 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 102 / 5e-27 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 101 / 1e-26 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.010G129400 [exp] 76 / 5e-17 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G192600 [exp] 76 / 7e-17 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G038300 [exp] 74 / 2e-16 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 72 / 2e-15 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 70 / 7e-15 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.010G242300 [exp] 67 / 9e-14 AT3G06260 524 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010790 pacid=23170758 polypeptide=Lus10010790 locus=Lus10010790.g ID=Lus10010790.BGIv1.0 annot-version=v1.0 ATGCCTGCATTTCTCTTTTCTTTCATTGTCATTCTCCTTCTTCTACCTTTGACTTCCAATGCATCCCTCACTTTCAAAGAAGCTCCCCAGTTTTACAATT CCCCTGACTGCCCCTCCGCCGCTGACCATGACGCCATCTTCTGTTCAGATCGCGCAGTCCACGTGGCCATGACCTTAGACACCGCCTACCTCCGCGGCTC CATGGCCGCTATCCTCTCAGTTCTCCAGCACTCCTCCTGCCCACAGAACATCGCTTTCCATTTCGTAGCATCAGAATCAGCCAACGCCTCCTCCGCCGTA CTGCAATGCCACTTTCACTTTCTACTTCACTCCGACCTTCTGGTCCAATCCGTCTCTTTCGTTGACCTTCGCCGACAGGAAGGCCTGCTACTTCAATACC GGGGTTATGGTGATTGA
AA sequence Show only first row Show all	>Lus10010790 pacid=23170758 polypeptide=Lus10010790 locus=Lus10010790.g ID=Lus10010790.BGIv1.0 annot-version=v1.0 MPAFLFSFIVILLLLPLTSNASLTFKEAPQFYNSPDCPSAADHDAIFCSDRAVHVAMTLDTAYLRGSMAAILSVLQHSSCPQNIAFHFVASESANASSAV LQCHFHFLLHSDLLVQSVSFVDLRRQEGLLLQYRGYGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	0	1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	1.7	0.9792
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	2.4	0.9780
AT3G16070			unknown protein		Lus10034910 [exp]	7.1	0.9632
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	7.5	0.9751
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	8.4	0.9642
AT1G11655			unknown protein		Lus10020050 [exp]	9.5	0.9658
AT5G61340			unknown protein		Lus10034727 [exp]	10.1	0.9701
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	10.2	0.9673
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	10.2	0.9733
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	12.5	0.9644

Compare expression of checked genes

Lus10010790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.