Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19310 234 / 7e-78 RING/U-box superfamily protein (.1) AT2G23780 222 / 3e-73 RING/U-box superfamily protein (.1) AT1G74990 135 / 2e-40 RING/U-box superfamily protein (.1) AT4G03510 108 / 9e-29 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT4G27470 100 / 2e-25 ATRMA3 RING membrane-anchor 3 (.1) AT4G28270 95 / 5e-24 ATRMA2 RING membrane-anchor 2 (.1) AT3G58030 94 / 2e-22 RING/U-box superfamily protein (.1.2.3.4) AT2G42030 92 / 1e-21 RING/U-box superfamily protein (.1) AT2G44410 78 / 1e-16 RING/U-box superfamily protein (.1) AT2G26350 56 / 4e-09 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016303 [exp] 408 / 1e-146 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1) Lus10022492 [exp] 258 / 2e-87 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016796 [exp] 258 / 2e-87 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10021063 [exp] 112 / 5e-29 AT3G58030 362 / 1e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10029292 [exp] 108 / 2e-27 AT3G58030 374 / 6e-127 RING/U-box superfamily protein (.1.2.3.4) Lus10016255 [exp] 108 / 2e-27 AT3G58030 362 / 2e-122 RING/U-box superfamily protein (.1.2.3.4) Lus10004162 [exp] 108 / 2e-27 AT3G58030 367 / 3e-124 RING/U-box superfamily protein (.1.2.3.4) Lus10018489 [exp] 105 / 2e-27 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10011184 [exp] 104 / 3e-27 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133000 [exp] 332 / 2e-116 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 330 / 4e-116 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.005G127900 [exp] 262 / 5e-89 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.007G031600 [exp] 246 / 1e-82 AT2G23780 227 / 4e-75 RING/U-box superfamily protein (.1) Potri.001G401600 [exp] 110 / 3e-29 AT4G27470 205 / 5e-66 RING membrane-anchor 3 (.1) Potri.006G193600 [exp] 112 / 1e-28 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.016G058300 [exp] 110 / 4e-28 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.019G100800 [exp] 105 / 2e-27 AT4G03510 187 / 1e-58 RING membrane-anchor 1 (.1.2) Potri.004G042700 [exp] 104 / 2e-27 AT4G03510 157 / 1e-47 RING membrane-anchor 1 (.1.2) Potri.011G051800 [exp] 104 / 2e-27 AT4G27470 163 / 8e-50 RING membrane-anchor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10010791 pacid=23170777 polypeptide=Lus10010791 locus=Lus10010791.g ID=Lus10010791.BGIv1.0 annot-version=v1.0 ATGGCCAGTGGGTTTGGGGAATCAACCAGCAGGCAACCTCAAAGCCCCTCGTTCTCTAACAGCAATGGCAATGGCGATGCAGGCAACTTCGAATGCAATA TCTGCTTCGACCTAGCGCAAGACCCTATTGTAACTCTCTGTGGCCATCTTTTCTGTTGGCCTTGTCTCTATAAGTGGCTACACTTTCACTCTCAGTCTAG GGAATGTCCTGTTTGCAAGGCTCTAGTTGAGGAGCAGAAGTTGGTTCCCCTATATGGCAGGGGTAAAACATCTACGGACCCGAGATCCAAGTCCATTCCT GGTGTCAATATTCCGAACCGTCCAGCTGGACGGAGGCCCGAAACGGCTCCTCCACCTCCGGAACCAAATCATCATTTTGCTCCGCATGGATTTGGATTCA TGGGAGGTTTCGCACCTACGGCGACGGCTAGGTTTGGGAGTTTCACTCTTTCAGCAGCTTTCGGTGGCCTATTCCCTTCACTCTTCAACCTTAATGTTCA TGGATTTCCAGAAGCGGCCATGTATGGTGGTGCTACTGGTTTTCCTTATGGGTTCACTAATTCATTTCATGGTGGCCACGCGCATGCATATCCGCAGCAT CAAGGGCAAGGGCAGCAAGATTATTATCTCAAAAGGCTGCTTTTCTTCGTTGGTTTTTGTGTTCTCCTTGCTCTGCTCTGGCAGTAG
AA sequence Show only first row Show all	>Lus10010791 pacid=23170777 polypeptide=Lus10010791 locus=Lus10010791.g ID=Lus10010791.BGIv1.0 annot-version=v1.0 MASGFGESTSRQPQSPSFSNSNGNGDAGNFECNICFDLAQDPIVTLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEQKLVPLYGRGKTSTDPRSKSIP GVNIPNRPAGRRPETAPPPPEPNHHFAPHGFGFMGGFAPTATARFGSFTLSAAFGGLFPSLFNLNVHGFPEAAMYGGATGFPYGFTNSFHGGHAHAYPQH QGQGQQDYYLKRLLFFVGFCVLLALLWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19310			RING/U-box superfamily protein...		Lus10010791 [exp]	0	1
AT1G80870			Protein kinase superfamily pro...		Lus10026069 [exp]	6.9	0.7871
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	7.2	0.7777
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10038424 [exp]	10.1	0.7935
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10038995 [exp]	10.6	0.7427
AT2G36330			Uncharacterised protein family...		Lus10042123 [exp]	14.8	0.7581
AT1G53510		ATMPK18	ARABIDOPSIS THALIANA MAP KINAS...		Lus10005568 [exp]	16.1	0.7277
AT1G67050			unknown protein		Lus10009160 [exp]	21.5	0.7716
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10006959 [exp]	23.8	0.7778
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	25.6	0.7611
AT3G11760			unknown protein		Lus10016183 [exp]	26.0	0.7101

Compare expression of checked genes

Lus10010791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.