Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42620 300 / 3e-96 metalloendopeptidases;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016304 [exp] 347 / 1e-114 AT5G42620 1299 / 0.0 metalloendopeptidases;zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133300 [exp] 327 / 3e-106 AT5G42620 1397 / 0.0 metalloendopeptidases;zinc ion binding (.1.2) Potri.014G040800 [exp] 321 / 7e-104 AT5G42620 1354 / 0.0 metalloendopeptidases;zinc ion binding (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010792 pacid=23170755 polypeptide=Lus10010792 locus=Lus10010792.g ID=Lus10010792.BGIv1.0 annot-version=v1.0 ATGGAGCTGGTTGTCCGCTGCATCAGTCCATGTTGCTGGCGTGGATTTCCCACTAACCTTAGATTCACTGTTGTTGTCTTCGAGGTCGCCGTGGATGGAA AATGGAAAGTTTGTCCAGAAGCAGGTGGACCACTTGAGTTTCCTGGATTTAATGGTGAACTCATCTGCCCAGCCTATCATGAACTCTGTGCTACAGATCC TCTCCCTGTATCTGGCCAATGCCATAAATCATGCAACTTCAATGGGGATTGCATCGATGGGAGGTGCCACTGTTTCCTAGGTTATCATGGTCATGATTGC AGTAAACGAGTCTGCCCTGGTAATTGCAACGGAAATGGCAAGTGCCTTGGAGATGGTGTCTGCAAGTGCAGAAAGAGTTACACTGGCGTCGACTGTGCCA CCGCTGTCACACAGAAATCAAGCATACTGCAACAACTAGAAGAAGTTGTTGTAATGCCAAATTACCATAGATTATTCCCAGGTGGTGCTCGTAAGCTATT CAACCTATTCGGAAGCAGCTATTGTGACGCAGCTGCTAAACGACTAGCGTGCTGGATCTCTATTCAAAAGTGTGATAAAGACAGCGACAACAGGCTGCGA GTTTTCCATTCAGCGTGCATGGCTTACAACTCAGCATGCGGGGCATCACTCGACTGCTCTGACCAAACACTATTCAGCAGTAAAGAAGAAGGTGAAGGTC AGTGCACAGGAGTCGAGGGAATGAAAGTATCATGGTTGAGTCGATTGCGGGTTATGCTAGTTTCGAGTAGTACTTCATTGAAAGGAAGTTTGTAA
AA sequence Show only first row Show all	>Lus10010792 pacid=23170755 polypeptide=Lus10010792 locus=Lus10010792.g ID=Lus10010792.BGIv1.0 annot-version=v1.0 MELVVRCISPCCWRGFPTNLRFTVVVFEVAVDGKWKVCPEAGGPLEFPGFNGELICPAYHELCATDPLPVSGQCHKSCNFNGDCIDGRCHCFLGYHGHDC SKRVCPGNCNGNGKCLGDGVCKCRKSYTGVDCATAVTQKSSILQQLEEVVVMPNYHRLFPGGARKLFNLFGSSYCDAAAKRLACWISIQKCDKDSDNRLR VFHSACMAYNSACGASLDCSDQTLFSSKEEGEGQCTGVEGMKVSWLSRLRVMLVSSSTSLKGSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42620			metalloendopeptidases;zinc ion...		Lus10010792 [exp]	0	1
AT5G22280			unknown protein		Lus10016983 [exp]	4.0	0.7831
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10040237 [exp]	16.1	0.7790
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	29.7	0.7333
AT2G45690		PEX16, SSE1, AT...	SHRUNKEN SEED 1, ARABIDOPSIS P...		Lus10036549 [exp]	30.3	0.7521
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	33.1	0.7042
AT1G13570			F-box/RNI-like superfamily pro...		Lus10040760 [exp]	37.7	0.7602
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	40.0	0.7558
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	42.5	0.7337
AT1G12390			Cornichon family protein (.1)		Lus10004320 [exp]	48.4	0.7397
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	51.0	0.7140

Compare expression of checked genes

Lus10010792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.