Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42610 255 / 1e-83 Protein of unknown function (DUF607) (.1) AT2G23790 245 / 5e-79 Protein of unknown function (DUF607) (.1) AT4G36820 220 / 2e-69 Protein of unknown function (DUF607) (.1) AT5G66650 202 / 2e-62 Protein of unknown function (DUF607) (.1) AT1G57610 126 / 8e-34 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) AT1G09575 126 / 1e-33 Protein of unknown function (DUF607) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016305 [exp] 581 / 0 AT2G23790 264 / 1e-86 Protein of unknown function (DUF607) (.1) Lus10016799 [exp] 260 / 1e-84 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 249 / 3e-80 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 227 / 2e-72 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 224 / 4e-71 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 139 / 4e-38 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 110 / 8e-28 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 52 / 8e-09 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041000 [exp] 345 / 7e-118 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 335 / 2e-114 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 235 / 4e-75 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 218 / 1e-68 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 134 / 3e-36 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 129 / 2e-34 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10010793 pacid=23170738 polypeptide=Lus10010793 locus=Lus10010793.g ID=Lus10010793.BGIv1.0 annot-version=v1.0 ATGGCACTTCGGAAATTATTCTCCAAGCGTCTCCACGCCGTCGGTCACTTTGCGCCTTCGCCGGCCGTCAAATACTCGGTGAGCCCAAACTCCGCAAGAT CGAACCTACATCAGGAGCTCCAGGAAGTCGCCAACAGCGGACTCAATTGGAACCGTTTTATCCATCGTACGGCGCTGAGGAACCATTTGCCGGAGTTCCT CTCTTTGCCTGTCGGCGATAAACTCCGGGAGAAACTCCGGCTCGTCAACGTAGCCGATGACCGACTACAGTGGACTGGACTTAATCCACCTCCTCCTACT TCATCGTCGTCGGCTCCGGCGATCGGCCGACGCGGTATGTCTGTTGAGGAAACGAGGAAGATCTTAAGGCTGGCTCAGATGGAGAAATTGAAAGCGAGGC TGAACTCGATCCCGACGAGCTCGATCCCGCTGTCGGAATTTGCTCAGATCTGCGTTCAGGAATGCGGAAATGAGGATCAAGGCGCCAATTTCGCCAGAAA GCTCGACGAGTCTGGAAACGTCATTGTTTTAGGGAACATCGTCTTTCTCCGGCCAGAGCAGGTTGCGGAATCGATGGAAGGCATAATCTCAGAGTCAATA ATAGCACGCACAAACGATCCAAGGAAGAGAACACTAGAAGAGATGCACAAGGAAAAGTCCCAAATCGACGAAAAGGCACGAGCCCAAGTTCGAGCTGAGC TCTACTGCGGGCTGGGCTTTTTAACGGCTCAGACGCTGGGTTTTATGAGACTGACGTTCTGGGAACTGAGTTGGGATGTGATGGAGCCTATTTGCTTTTT CACCACCTCTCTCTATTTCGGGATGGCCTACACTTTCTTTCTCAGGACCTCCACTGAACCTACATTTGAAGGCTACTTTGGCCACAGATTTCATGTCAAG AAGAAGAAGCTGATGAAGCTTCATGGTTTTGATCTAGAGAAATATGAGCATCTCTGCACGGTCTTCAACAATAATAACTTCTCTTCACATCCTTCTAAAG GGCTGAAACGAGAAGAGTGGGATCGCATTGCTTGTTCGTAG
AA sequence Show only first row Show all	>Lus10010793 pacid=23170738 polypeptide=Lus10010793 locus=Lus10010793.g ID=Lus10010793.BGIv1.0 annot-version=v1.0 MALRKLFSKRLHAVGHFAPSPAVKYSVSPNSARSNLHQELQEVANSGLNWNRFIHRTALRNHLPEFLSLPVGDKLREKLRLVNVADDRLQWTGLNPPPPT SSSSAPAIGRRGMSVEETRKILRLAQMEKLKARLNSIPTSSIPLSEFAQICVQECGNEDQGANFARKLDESGNVIVLGNIVFLRPEQVAESMEGIISESI IARTNDPRKRTLEEMHKEKSQIDEKARAQVRAELYCGLGFLTAQTLGFMRLTFWELSWDVMEPICFFTTSLYFGMAYTFFLRTSTEPTFEGYFGHRFHVK KKKLMKLHGFDLEKYEHLCTVFNNNNFSSHPSKGLKREEWDRIACS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	0	1
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	4.2	0.9530
AT1G54730			Major facilitator superfamily ...		Lus10029961 [exp]	4.5	0.9403
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	5.8	0.9268
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	6.5	0.9109
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025409 [exp]	9.8	0.9239
AT2G20820			unknown protein		Lus10037883 [exp]	10.7	0.8940
					Lus10018670 [exp]	14.0	0.9047
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10016369 [exp]	14.2	0.9432
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	16.4	0.9435
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039830 [exp]	17.5	0.9288

Compare expression of checked genes

Lus10010793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.