Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19020 754 / 0 CMT2 chromomethylase 2 (.1) AT1G69770 588 / 0 CMT3 chromomethylase 3 (.1) AT1G80740 553 / 0 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1) AT5G49160 196 / 4e-52 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G14140 193 / 3e-51 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G08990 188 / 1e-49 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G13610 179 / 8e-47 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017720 [exp] 592 / 0 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 585 / 0 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 584 / 0 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10004295 [exp] 210 / 6e-57 AT5G49160 1783 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10019220 [exp] 207 / 8e-56 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10016308 [exp] 50 / 8e-08 AT4G19020 58 / 1e-11 chromomethylase 2 (.1) Lus10040115 [exp] 51 / 2e-06 AT4G17030 123 / 4e-33 expansin-like B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100000 [exp] 916 / 0 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.001G009600 [exp] 644 / 0 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.018G138000 [exp] 206 / 1e-55 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 206 / 1e-55 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.004G134000 [exp] 204 / 4e-55 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.003G215800 [exp] 185 / 9e-50 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase CL0049 [flax] [poplar] Tudor PF00385 [flax] [poplar] Chromo Chromo (CHRromatin Organisation MOdifier) domain
Representative CDS sequence Show only first row Show all	>Lus10010796 pacid=23170774 polypeptide=Lus10010796 locus=Lus10010796.g ID=Lus10010796.BGIv1.0 annot-version=v1.0 ATGCACATCGGAAAGATCGTGGAATTCTTTCGATCAGCTGATGAAGAAGACTATTTTAGGGTCCAATGGTTTTATAAGGCTGAAGATACAATAGGTCTGA AGCGGCAGCTGTCTCAAAAGTTTGACTTTTACTTTGACATGGAATACTGTGTGGATTACTCCACATTCCGAGCCTTGAGTTCTGACAGTTCCTTTTCTAA GGGACATGACTTGCCAGGACCAGGTGTATTGGACACTATTGCTGCCGCAAATGGTGTTTCTGCTTCCTCAAATAACATCTCAGTGCAAAATGCGTCTCAA AATGGAAGTTGCAAGCGAGAATTAGTTCTATTAGATCTCTTTTCTGGTTGTGGTGGGATGTCTACTGGATTGTGCATTGGTGCTGAACTTTCTGGGGTTC ATCTAGTGGTGAGATGGGCCCTTGACAGTAACAAGTCCGCATGTGAAAGCTTGAAACTAAATCACCCCAAAACACAAATTAGGAGTGAAGCCGCAGAGGA TTTTCTTGCACTGTTGAAGGAATGGGAGAAGTTATGCAAGCGTTTTTTGGTCAATGTCTCTGAACCATCACGATCCACGAGATTAAAAGCTTCAAAAGTT GAAGATCAGAACAATGATACGCTCAATGAAGCTGATATTGATATTGTTCCTGATGAATTTGAGGTCTCAAGGATAGTTGGCATTTGTTTTGGCGATCCCG AGTCTACGGGAGACCATGGGTTGAAACTTAAGGTCCATTGGAAGGGTTACAGTGCAAAAGAAGATTCATGGGAGCCAATAGAATCCCTAAGTAACTGCCA AGAGTGCATTAGAGATTTTGTGAGAGAAGGAGTGAAATCCAAGATCTTACCTGTTCCTGGTGATGTTGATGTGATTTGTGGAGGCCCTCCATGCCAAGGA ATTAGTGGTTATAATCGCTTCAGAAATGTTGTTTCTCCACTCGATGATGAAAGAAATCGTCAGATTGGCATTTTCATGGACATAGTGCAGTTCTTGAAAC CTAAGTTTGTGCTCATGGAAAATGTTGTTGATATTCTTAGATTTGACAAGGCTTCTCTTGCGAGATATGCTTTAAGTCGTCTGGTCCAAATGAAGTATCA AGCAAGGCTTGGTACCATGGCAGCTGGCTGTTATGGTCTCCCCCAGTTTCGTCTCCGTGTCTTTTTGTGGGGAGCACACGCTTCTGAGAAACTACCACAA TTTCCATTACCTACTCATGATGTTATTGTTAGATATTGGCCACCACCTGAGTTTGAGCGCAATACTGTTGCTTATGATGAAGAACAGCCTCGTCCCCTAG AAAGAGCTATAGTTCTTCAAGATGCCATATCTGATCTTCCAGCTGTCACCAGTCATGAAACCCGAGAGGAAATGCCATACAAAAAGCCACCAGAAACAGA GTTTCAAGCTTTCATTCGGGCACCAAAGTCTGAGATGATAGGTCATCTGGAAGGTGGTGGCGAAGTAAAAAAAGTTGTGTTGCATGATCACCGCACTTAC TCTTTGAATGAAGAAGACTATGCTCGAATAGCTTCACGACAGGGTGCAAATTTCAGAGATCTCCCTGGAATTATAGTTGGAGCTGACAACGTTACCAGGC GAGATCCAAAGGTGGACCAAGTACTTTTGCCATCTGGAAAGCCGCTGGTACCGGATTTTGCATTGACATTTTCTCGAGGGAAGTCTAGAAGGTTAGGAGT CTGTTCATCTATCTTTTGCCTTCCTCGCAGCAACGCAACTCCATCCGTTGTCTTAACGCCATATGGAAGATTATGGTGGGATGAAACTGTCCCCACCGTG TTGACATATCCAGATCTTCACTGCCAGCAAGTGCTACATCCGGATCAGGATCGAGTCCTCACTATACGAGAATGCGCAAGGCTTCAAGGGTTTCCAGATT ATTATAGATTCTGTGGTGGTGTTAAAGCCAGGTATCGTCAGATAGGGAATGCAGTTGCTGTGCCAGTGGGTCGAGCCTTGGGATATGCGATGGGAATGGC AGCTCTGGGACTTAGCGATGATAAACCACTGATGAGTCTTCCCAAAAAGTTCTCACATTCAACTAATCTTCAACTACATGAGCAGGGGGGAGCATCTGGA ACCAGTTAA
AA sequence Show only first row Show all	>Lus10010796 pacid=23170774 polypeptide=Lus10010796 locus=Lus10010796.g ID=Lus10010796.BGIv1.0 annot-version=v1.0 MHIGKIVEFFRSADEEDYFRVQWFYKAEDTIGLKRQLSQKFDFYFDMEYCVDYSTFRALSSDSSFSKGHDLPGPGVLDTIAAANGVSASSNNISVQNASQ NGSCKRELVLLDLFSGCGGMSTGLCIGAELSGVHLVVRWALDSNKSACESLKLNHPKTQIRSEAAEDFLALLKEWEKLCKRFLVNVSEPSRSTRLKASKV EDQNNDTLNEADIDIVPDEFEVSRIVGICFGDPESTGDHGLKLKVHWKGYSAKEDSWEPIESLSNCQECIRDFVREGVKSKILPVPGDVDVICGGPPCQG ISGYNRFRNVVSPLDDERNRQIGIFMDIVQFLKPKFVLMENVVDILRFDKASLARYALSRLVQMKYQARLGTMAAGCYGLPQFRLRVFLWGAHASEKLPQ FPLPTHDVIVRYWPPPEFERNTVAYDEEQPRPLERAIVLQDAISDLPAVTSHETREEMPYKKPPETEFQAFIRAPKSEMIGHLEGGGEVKKVVLHDHRTY SLNEEDYARIASRQGANFRDLPGIIVGADNVTRRDPKVDQVLLPSGKPLVPDFALTFSRGKSRRLGVCSSIFCLPRSNATPSVVLTPYGRLWWDETVPTV LTYPDLHCQQVLHPDQDRVLTIRECARLQGFPDYYRFCGGVKARYRQIGNAVAVPVGRALGYAMGMAALGLSDDKPLMSLPKKFSHSTNLQLHEQGGASG TS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19020		CMT2	chromomethylase 2 (.1)		Lus10010796 [exp]	0	1
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	7.9	0.7471
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	8.0	0.7470
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10033622 [exp]	8.5	0.7278
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	16.3	0.7268
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	19.1	0.7316
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	21.0	0.7213
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	21.0	0.6902
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Lus10038886 [exp]	22.4	0.7171
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	27.6	0.7245
AT2G41020			WW domain-containing protein (...		Lus10027285 [exp]	28.9	0.6912

Compare expression of checked genes

Lus10010796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.