Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16580 442 / 6e-154 Protein phosphatase 2C family protein (.1) AT5G66720 364 / 5e-124 Protein phosphatase 2C family protein (.1.2) AT4G33500 181 / 5e-51 Protein phosphatase 2C family protein (.1) AT2G30170 152 / 2e-43 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016309 [exp] 566 / 0 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10014413 [exp] 362 / 6e-124 AT4G16580 390 / 4e-134 Protein phosphatase 2C family protein (.1) Lus10023916 [exp] 353 / 1e-119 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10031355 [exp] 135 / 1e-36 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 134 / 3e-36 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2) Lus10001655 [exp] 125 / 5e-34 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G042800 [exp] 460 / 2e-160 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G028900 [exp] 401 / 1e-138 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.005G125700 [exp] 401 / 2e-138 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 188 / 3e-57 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 185 / 2e-56 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 175 / 1e-52 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 164 / 9e-47 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 145 / 8e-42 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 134 / 3e-36 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 43 / 0.0002 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10010797 pacid=23170760 polypeptide=Lus10010797 locus=Lus10010797.g ID=Lus10010797.BGIv1.0 annot-version=v1.0 ATGCCGTCTGGACGTTTTTCCAAGCTTAGAACTGCGGTTCAGAATGGAATTCAGAGATCAATTGTAGGGCACCAACACAGCGTTCAGGAGTCGATTGATA TTCTGATTGGGCAGAGCAAGTTTCAATTCTGTAATTACAAGCTGTTATATTCTGTTCGGATTGCATCCTTGGCAGATCTGCAGCTACTTTGTAGCCCTGG TATCGTCTCAACAGCTGAGATGGCAGTCTCAGCTAGACATTTCCATAGCTCCTCCCCTTCATGTTCTTCAGCTCGAACGGCCCCTGATGTTAACTATGAT AGTTCGAATCGCGAGGAAAAGCTTGATGGTGCTTCGGATTCATCAGAAGTAAAGCTCTCAGGCAGGTCACTGAAGCTACTCTCTGGATCCTGCTGCCTGC CCCATCCTGATAAGGAAGAAAGTGGTGGCGAGGATGCTCACTTCATCTGTTCGGACCAGCATGCTATAGGTGTGGCAGATGGTGTTGGTGGTTGGGCAGA TCTTGGAGTTGATGCAGGACAGTATTCCAGGGAACTGATGTCTCATTCAGTTAGAGCAATCCTTGAGGAACCAAAGGGATCTGTAGATCCTGCTAGAGTC TTGGAGAAAGCTCATTCTAGTACAAAAGCTAAAGGTTCTTCAACCGCATGCATTTTAGCTCTCACAGAAGAGGGTCTACGTGCTATCAATTTAGGGGACA GTGGCTTTATGGTGGTTCGAGATGGCCACACCGTTGTTCGCTCTCCTGTGCAGCAGCATGACTTCAATTTTACCTTTCAGCTTGAGAGTGGAAATAATGG CGATCTCCCTAGCTCTGGCCAGGTTTTCACGGTAGCGGTAGCTCCTGGAGACGTAATTGTAGCTGGAACAGATGGATTGTTTGACAACCTTTACAACAAT GAGATCACAGCTGTAGTAGTGCATGCAGTGAGAGCTGGATTAGAGCCACAGGTTACAGCTCAGAAAATCGCAGCATTAGCAAGACAACGGGCACAAGAGA AAGACAGGCAGACCCCTTTCTCAACTGCTGCACAAGATGCTGGATTCCGCTATTATGGTGGAAAACTCGACGACATCACTGTTGTCGTTTCCTATATTAG GAACTCCAACGAGGTACACATCATTAACGTTGCTGAAGAATGA
AA sequence Show only first row Show all	>Lus10010797 pacid=23170760 polypeptide=Lus10010797 locus=Lus10010797.g ID=Lus10010797.BGIv1.0 annot-version=v1.0 MPSGRFSKLRTAVQNGIQRSIVGHQHSVQESIDILIGQSKFQFCNYKLLYSVRIASLADLQLLCSPGIVSTAEMAVSARHFHSSSPSCSSARTAPDVNYD SSNREEKLDGASDSSEVKLSGRSLKLLSGSCCLPHPDKEESGGEDAHFICSDQHAIGVADGVGGWADLGVDAGQYSRELMSHSVRAILEEPKGSVDPARV LEKAHSSTKAKGSSTACILALTEEGLRAINLGDSGFMVVRDGHTVVRSPVQQHDFNFTFQLESGNNGDLPSSGQVFTVAVAPGDVIVAGTDGLFDNLYNN EITAVVVHAVRAGLEPQVTAQKIAALARQRAQEKDRQTPFSTAAQDAGFRYYGGKLDDITVVVSYIRNSNEVHIINVAEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16580			Protein phosphatase 2C family ...		Lus10010797 [exp]	0	1
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	2.2	0.8359
AT3G59910			Ankyrin repeat family protein ...		Lus10010581 [exp]	2.2	0.8690
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Lus10041132 [exp]	3.2	0.8480
AT5G08560			transducin family protein / WD...		Lus10001410 [exp]	5.7	0.8233
AT1G02290			unknown protein		Lus10018907 [exp]	6.0	0.8228
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	6.5	0.8286
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	6.9	0.8189
AT3G18140			Transducin/WD40 repeat-like su...		Lus10042333 [exp]	7.3	0.8426
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	8.2	0.8373
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	8.9	0.8155

Compare expression of checked genes

Lus10010797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.