Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 392 / 1e-134 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 299 / 6e-98 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 293 / 9e-96 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14620 286 / 6e-93 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14690 285 / 2e-92 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 281 / 8e-91 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 276 / 3e-89 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14630 276 / 5e-89 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14660 275 / 9e-89 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14650 267 / 2e-85 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 614 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010821 [exp] 440 / 1e-152 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 292 / 4e-95 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033044 [exp] 290 / 7e-94 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010800 [exp] 275 / 4e-93 AT1G75130 211 / 2e-66 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 274 / 8e-88 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026178 [exp] 267 / 4e-85 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 252 / 3e-79 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10026085 [exp] 248 / 5e-78 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035200 [exp] 495 / 7e-175 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 453 / 3e-158 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 439 / 5e-152 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 419 / 4e-145 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043100 [exp] 418 / 1e-144 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 417 / 3e-144 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 300 / 3e-98 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 291 / 8e-95 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 290 / 3e-94 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099200 [exp] 283 / 2e-93 AT3G14660 466 / 3e-163 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010802 pacid=23170770 polypeptide=Lus10010802 locus=Lus10010802.g ID=Lus10010802.BGIv1.0 annot-version=v1.0 ATGGAGAGAGTTAAGGAATGGGTGCCGGAGATGGTGGCCAGCGCCGGGAAGATGTTGGAGAAGTGGGAGGAAATTAGAGGGGACAAGGAAGAGCTGGAGA TTGACGTTCATAAAGAGGCACACAATTTATCTGCCGATATCATTTCCAGAACTGCTTTCGGGAGCAGCTTCGAAGAAGGAAAGAGAATATTCACGCTCCA AGATCAGCAACTGCACTTGGTTTCTCTGGCTCTTAGAACCATCTACATTCCAGGTTTTAGGTTCTTGCCGACGAAGAAGAACAGAGAGAGGTGGAGGTTG GAAAGGGAAACCAGAGAATCGGTTAGAGCGTTGATTCAGAGCAACAACAGGGTATCGGAAAATTACAGAAATCTACTTACGCTGCTGACATCTCCGTACA AGAATGAGGAAGCGAAAGAGGAGAAATTGAAAGTGGAGGAGGTTATAGACGAATGCAAGACGTTTTACTTTGCAGGAAAAGAAACTACTGCTAATCTCAT TACTTTTGCACTACTCCTCTTAGCAAATCATCAAGAATGGCAACTCAAGGCGCGTGAAGAAGTGTTTCGTGTTCTTGGAGACCGCAAATCTCCTGTTGCT GAAATCCTAGGCGACCTTAAGACTCTGAATTTGATACTCAACGAAACTCTAAGGATGTATCCTCCGGCGGTGTTACTAATGAGGGAAACAAGCAAAAAGG TTAAGCTAGGAAGCTTGGAAGTTCCTTCTGGAACACAATTCTATGTATCTTCGATAGCAATTCACTACGACTCGGAAGTATGGGGAGAAGACGCTCGCGA GTTCAATCCTTTGCGATTCATTGAGCCCAGAAAGTATTTGGCATCCTTCTTTCCATTTGGGATTGGTCCTAGAATCTGCGTGGGTCAGAATTTAGCACTA GTTGAAGCCAAAGTAGTTTTGGCTACAATCATCAGAAACTATTCGTTTTCCCTGTCGCCAACATATGTTCATGCTCCCTTGCTCATAATCAGCTTACAGC CTCAGTACGGCGCTCAGATTTTGTTTAGAAAGATCACTTGA
AA sequence Show only first row Show all	>Lus10010802 pacid=23170770 polypeptide=Lus10010802 locus=Lus10010802.g ID=Lus10010802.BGIv1.0 annot-version=v1.0 MERVKEWVPEMVASAGKMLEKWEEIRGDKEELEIDVHKEAHNLSADIISRTAFGSSFEEGKRIFTLQDQQLHLVSLALRTIYIPGFRFLPTKKNRERWRL ERETRESVRALIQSNNRVSENYRNLLTLLTSPYKNEEAKEEKLKVEEVIDECKTFYFAGKETTANLITFALLLLANHQEWQLKAREEVFRVLGDRKSPVA EILGDLKTLNLILNETLRMYPPAVLLMRETSKKVKLGSLEVPSGTQFYVSSIAIHYDSEVWGEDAREFNPLRFIEPRKYLASFFPFGIGPRICVGQNLAL VEAKVVLATIIRNYSFSLSPTYVHAPLLIISLQPQYGAQILFRKIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	0	1
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	4.8	0.8872
AT5G41270			unknown protein		Lus10035306 [exp]	4.9	0.8542
					Lus10028601 [exp]	11.9	0.7755
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	14.2	0.7621
AT4G18130		PHYE	phytochrome E (.1)		Lus10004592 [exp]	14.4	0.8657
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	15.5	0.8311
AT3G20390			endoribonuclease L-PSP family ...		Lus10021523 [exp]	17.4	0.8441
AT1G47740			PPPDE putative thiol peptidase...		Lus10032708 [exp]	18.7	0.8110
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10036633 [exp]	21.5	0.8597
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	23.5	0.7763

Compare expression of checked genes

Lus10010802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.