Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 395 / 1e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 371 / 2e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 269 / 6e-90 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 257 / 3e-85 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 90 / 3e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 79 / 5e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 80 / 6e-17 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 69 / 3e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 64 / 8e-12 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT5G47510 58 / 2e-09 Sec14p-like phosphatidylinositol transfer family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016312 [exp] 572 / 0 AT1G75170 387 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 441 / 2e-158 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 387 / 2e-136 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 388 / 5e-136 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 275 / 6e-91 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 273 / 6e-91 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 200 / 5e-64 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 103 / 4e-26 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 102 / 1e-25 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261000 [exp] 430 / 8e-154 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 414 / 2e-147 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 414 / 5e-147 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 396 / 3e-140 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 281 / 2e-93 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 267 / 9e-89 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 110 / 6e-29 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 100 / 7e-25 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 100 / 1e-24 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 95 / 6e-23 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10010804 pacid=23170757 polypeptide=Lus10010804 locus=Lus10010804.g ID=Lus10010804.BGIv1.0 annot-version=v1.0 ATGTTTCGTCGCAAGACTAACACTCACCATGAACCTGAGGATGAGTCTCAGCAACGGGAAGCTAAGATTAACGAGCTTAAAGCTGCAATGGGTCCTCTGT CAGGACGGAGCTTGATTTACTGCACAGACGCCTGCTTCAGAAGGTACCTAGTAGCAAGGAACTGGAATGTGGAGAAAGCCCAAAAGTTGTTGCAGGAAAC TCTTAAATGGAGGTCCACCTACAAGCCTGAGGAGACTCGTTGGCCTGAGGTTGCACACGAAAGTGAGACGGGAAAGATATTCAGAGCTAATTTTCGTGAC AGACATGGGAGGACTGTTCTTATTCTCAGACCAGGAATGCAGAATACGAAATCAGCGGAGAATCAAATTCGACATCTGGTGTATCTCCTAGAGAATGCTG TGCTTAACCTTCCAGAGGGACAAGAACAGATGTCCTTCTTAATTGATTTCACAGGATGGTCTCTAACCAATAGAGTCCCCATCAAAACAGCTCATGAGAC GGCTTCCATTCTCCAATACCATTACCCTGAGAGGCTAGCCGTCGCCTTTCTCTATAATCCCCCTAGAATATTTGAAGCATTCTGGAAGGTTGTCAAGTAC TTCCTGGATCCCATCACCATCCAGAAGGTAAATTTCGTGTACCCAAAGAATCGAGGGAGCGTAGAGGTAATGAGATCGCACTTTGATGATCAGAACCTCC CAACTGAATTCGGAGGGGAAGCCAACTTGAAGTACGACCATGCAGAGTTCTCAAAGCTAATGCTTGAGGATGATGTCAAGACTGCTTCATTCTGGGGTTT CAACACAAAAGCCCAGGCTCCCCGTGAATGA
AA sequence Show only first row Show all	>Lus10010804 pacid=23170757 polypeptide=Lus10010804 locus=Lus10010804.g ID=Lus10010804.BGIv1.0 annot-version=v1.0 MFRRKTNTHHEPEDESQQREAKINELKAAMGPLSGRSLIYCTDACFRRYLVARNWNVEKAQKLLQETLKWRSTYKPEETRWPEVAHESETGKIFRANFRD RHGRTVLILRPGMQNTKSAENQIRHLVYLLENAVLNLPEGQEQMSFLIDFTGWSLTNRVPIKTAHETASILQYHYPERLAVAFLYNPPRIFEAFWKVVKY FLDPITIQKVNFVYPKNRGSVEVMRSHFDDQNLPTEFGGEANLKYDHAEFSKLMLEDDVKTASFWGFNTKAQAPRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10010804 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10003196 [exp]	2.6	0.7909
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	6.0	0.7532
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	6.0	0.7662
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	6.2	0.7102
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	14.3	0.7150
AT3G50910			unknown protein		Lus10041772 [exp]	14.7	0.7402
					Lus10039654 [exp]	15.0	0.7245
AT3G15760			unknown protein		Lus10043269 [exp]	20.9	0.7470
AT5G05190			Protein of unknown function (D...		Lus10034250 [exp]	21.5	0.6967
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	25.4	0.7064

Compare expression of checked genes

Lus10010804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.