Plant FIBer expression Database

Lus10010806 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42710 139 / 4e-34 unknown protein
AT3G24630 56 / 6e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016315
[exp]
1152 / 0 AT5G42710 179 / 4e-46 unknown protein
Lus10011100
[exp]
44 / 0.0007 AT3G24630 66 / 7e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G185300
[exp]
394 / 6e-124 AT5G42710 195 / 2e-51 unknown protein
Potri.002G261700
[exp]
385 / 1e-120 AT5G42710 185 / 4e-48 unknown protein
Potri.018G082300
[exp]
66 / 9e-11 AT3G24630 99 / 4e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10010806 pacid=23170769 polypeptide=Lus10010806 locus=Lus10010806.g ID=Lus10010806.BGIv1.0 annot-version=v1.0
ATGGCCAAAAGATCAGATTTTGCTCAGAAGCTGTTAGATGATCTCCGGCTCAGGAAGGAGCGGATGGCAGTTTCAAATCATCAGCATTCCAGAGGTTCAA
AACCAGTTGCTTCAGATACATATGCAAACGCAAGACAAACGAATAGAAGTTCCAGGGATATGCGAACTCAGCAGACAGCAGGTTTTAGGGCTGCAAGTGG
GCATAATAGACACAGTTCAAGCCATAGATCATTTTCGACGGAGGATGCTTCAAAGCAGCTTGTTCCAGTCAGAAGAGGTCAGCAAAGCCATCAGCAAATT
GGAGATCTCTCTATGGCACTGACTTTTGCTATACAGAACGGAGCAAAACTTGGGAGAATGGATGCACCGAGCAGCAAGTCCATGCTTAATTTCTTGCATC
AAATCAGCAGAAGATCAAGTGACTGGGGTAACATGCAAAAACCAAGTAATGTTGATATCCATTTCTCTTCATCCAGTCATCTTCCAGCTCTTTCTCACCA
GCATATCAGAGAGATTTCCAAAGGGGCACAACGATTGAATCAAATCTTGAGAGCTTGCTCTAGCGGCCTCAACTTTGATACTTATTCCGTCGACATAGGA
AAGGAGTTGCTGAAAGGAGCAACGGAATTGGAAGAGTCCTTGCGGATGCTTGTCAACCTGCAAGAATCCTCGGACTACATGGTCACCCCACAGAGTAAGA
GCCGGATCAAGTTGCTCGATGACAACAATGAAGAAGAAGATGATGATGTTGATGACAATAAAGTAGTGAAAGGTTCAGTTCAGATGAAGCAGATTGGTCT
GCCAAGGTTCTCATTTGATAAGCCATCAAGAATTTCTAGTTATGCCAAGGATGCTGCAAGGACTGACGTCAAGCCAAGACTATTAGCACTGCCTTACCAT
TCTGAACTTCCTGAAGACTTTTCAGGTGTAAGCAGCTCCAGTTTTGTTACTCACAAGAGATCATCAAGTCATGGATCCAACTTGAAAAATCCAGTAGTGT
CTGAACAGAGGAATCAGCCAAGTCCATCAAAACCAAAGCCAGAGAAAAAAAGAATCTCCAACGTAGTTGCTAAATTAATGGGACTGGAAGAACTTCCAGC
AAATGAAAACATGGCGGATGTTTCTGTAGAAAAGGAGGCCAGTTCCAGGAAGAAAATTTCAGGATCTGTTCTAAGCTCTCTGGAGAAGGGAAATGTCAAT
AGGAGGAACACAAAAGACGTGGAGAATTTGGTGCCTCCCCTAGGAAGAAAACAGAAGCAAGTGATGCAGGAGAAAACATACGCATTGGATTCCGAATGGA
ATTTGACACTCCACCACGACGGAAGAAAAATCTACAAGGATGTGGAAGGGTTAAATCCAATGAGAGGCTCGAACATGGCAAACATGAATATGGACAAGCA
GCAAAGCAACAACGTATTAAGTCAAATAAGCAGATCTGAAAAGGGCATTCAGAAGAAAGAATGGAAACAGAAAACTATAGAGGTCAAACGGGCACAGAAT
GTTCATGAATCTTTAGAGATTAACCCGCTACATGACCAGTACCATACAGTGAAAGGGTCAGAAGCTGCAACTACTTGGTCGACTCAAACAGAATTAAGGA
CAGAGAAGAGAGATACGAATAAGCAGATCTCAAGCAATCGAATGAAGGGTCCCAACAAGATGTCATTTCAAGGAAAATCTCACGGCAGCAATGGGTTCCA
GCACCAGAAGCTGCCTGTTTTGGCCCAGAATTTTGATCCAAAAGACACGAAGCAACAAAGGAATCATATTAAAAGGAAAGAACTAGATCAAATAAACCAA
GTAGATCCTTCTAGAAAAATCCCTATAGAACCTGGTGATGTAAGAATTACCAAAAGGGTTGGCCATAGTACATCCGGTGAATATCTTGAACAAAACAGAA
GTCGAACTAATGCCATAGCCCATAAGCAGGATCCACGAAGCAGGAACTCGGATGAGAAGTCAGCTTCAAGAGATCTGAAACCTGACGACACCATGAAGAA
GAAGAAAAACATCCTTTCGCCGGCATGA
AA sequence
>Lus10010806 pacid=23170769 polypeptide=Lus10010806 locus=Lus10010806.g ID=Lus10010806.BGIv1.0 annot-version=v1.0
MAKRSDFAQKLLDDLRLRKERMAVSNHQHSRGSKPVASDTYANARQTNRSSRDMRTQQTAGFRAASGHNRHSSSHRSFSTEDASKQLVPVRRGQQSHQQI
GDLSMALTFAIQNGAKLGRMDAPSSKSMLNFLHQISRRSSDWGNMQKPSNVDIHFSSSSHLPALSHQHIREISKGAQRLNQILRACSSGLNFDTYSVDIG
KELLKGATELEESLRMLVNLQESSDYMVTPQSKSRIKLLDDNNEEEDDDVDDNKVVKGSVQMKQIGLPRFSFDKPSRISSYAKDAARTDVKPRLLALPYH
SELPEDFSGVSSSSFVTHKRSSSHGSNLKNPVVSEQRNQPSPSKPKPEKKRISNVVAKLMGLEELPANENMADVSVEKEASSRKKISGSVLSSLEKGNVN
RRNTKDVENLVPPLGRKQKQVMQEKTYALDSEWNLTLHHDGRKIYKDVEGLNPMRGSNMANMNMDKQQSNNVLSQISRSEKGIQKKEWKQKTIEVKRAQN
VHESLEINPLHDQYHTVKGSEAATTWSTQTELRTEKRDTNKQISSNRMKGPNKMSFQGKSHGSNGFQHQKLPVLAQNFDPKDTKQQRNHIKRKELDQINQ
VDPSRKIPIEPGDVRITKRVGHSTSGEYLEQNRSRTNAIAHKQDPRSRNSDEKSASRDLKPDDTMKKKKNILSPA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42710 unknown protein Lus10010806
[exp]
0 1
AT3G01810 unknown protein Lus10015805
[exp]
1.4 0.9609
AT1G22060 unknown protein Lus10037927
[exp]
2.2 0.9430
AT2G46770 NAC NST1, ANAC043, ... NAC SECONDARY WALL THICKENING... Lus10030205
[exp]
2.4 0.9472
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10018889
[exp]
2.6 0.9392
AT2G46770 NAC NST1, ANAC043, ... NAC SECONDARY WALL THICKENING... Lus10002687
[exp]
5.3 0.9476
AT1G29170 ATSCAR3, WAVE2 WASP \(WISKOTT-ALDRICH SYNDROM... Lus10001897
[exp]
5.7 0.9247
AT5G42710 unknown protein Lus10016315
[exp]
6.9 0.9465
AT5G54670 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABID... Lus10036621
[exp]
8.0 0.9352
AT5G41140 Myosin heavy chain-related pro... Lus10001481
[exp]
8.5 0.9308
AT2G23360 Plant protein of unknown funct... Lus10004994
[exp]
8.5 0.9426

Lus10010806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.