Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42710 158 / 2e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016315 [exp] 493 / 2e-167 AT5G42710 179 / 4e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261700 [exp] 211 / 1e-61 AT5G42710 185 / 4e-48 unknown protein Potri.014G185300 [exp] 210 / 2e-61 AT5G42710 195 / 2e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010807 pacid=23170767 polypeptide=Lus10010807 locus=Lus10010807.g ID=Lus10010807.BGIv1.0 annot-version=v1.0 ATGTCTACCGCAAGCATACAGCAAGTCGACATACTAGAAGAACGACAAACCAAGGCTGAAGAAGCACCTAAATTGCAGGTACAGGATCATCTGAGTGACG ATTGTGAAAGCCTGCAGAGCCAACAAGTCCAAGCTTCCGCTGAAAGTGCAATCCTTATAGAGACAGATGATCAAGACGACCACCAACTCAATAGTGGCGG GAACGATGAACATGGGTCTCGCACCATTATCACCGATCCGACCACAGGAAGAGAAGATAGAACGGAAATCTACAATTCCCGTCAACAACTGGAGGAGAAG GAGGAGCAAAAAGTGAGCCAGCAGAAGAAACTACCGGAGCCACTAACAGAAGCTGAGAATCGCCTCAAACAAATTCTGGTAAAGAACCAACGATTCCTGG ACACAGCAGAGGCACTCTTCAGGCTCAACATACCGATAGACATCCTCAATGTCAATGTCAGTGACTCCCCCGATCCTCACAATGAAGAAGAGAGCAAGCT GATGATAGACTGCAGCTTCGAGGTGATGAAACGAAAAGGGAAAAGGCAAGAAATGCTCAGAAGAAGAATTCACAATCCCTTCACGAAGCTGACTGCCAAT TCTAGTAAGCGCGAATCCCTAGACGGCCTGATTCGGCAACTGTACACGGAACTCGAGAGGCTGAGGTTCTACGGAAGGAACGGGAACGCCGAGTCAGGAA TCGAAGAATACCTGCCCAAAATGCTGGAAATCGATGTGTTCGGCAGCGAGCCGGACGTGAACTCGATGTGGGAGATCGGCTGGGAAAATGTAGATTCGGC GTTTCCTCAGAAGGATGAAGTGATTAGGGAAGTAGAGAAGCAAGTCCTGAACGGACTTCTGGACGAGATCACCGGCGACCTTCTGGTGGTCTTTTGA
AA sequence Show only first row Show all	>Lus10010807 pacid=23170767 polypeptide=Lus10010807 locus=Lus10010807.g ID=Lus10010807.BGIv1.0 annot-version=v1.0 MSTASIQQVDILEERQTKAEEAPKLQVQDHLSDDCESLQSQQVQASAESAILIETDDQDDHQLNSGGNDEHGSRTIITDPTTGREDRTEIYNSRQQLEEK EEQKVSQQKKLPEPLTEAENRLKQILVKNQRFLDTAEALFRLNIPIDILNVNVSDSPDPHNEEESKLMIDCSFEVMKRKGKRQEMLRRRIHNPFTKLTAN SSKRESLDGLIRQLYTELERLRFYGRNGNAESGIEEYLPKMLEIDVFGSEPDVNSMWEIGWENVDSAFPQKDEVIREVEKQVLNGLLDEITGDLLVVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42710			unknown protein		Lus10010807 [exp]	0	1
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	2.8	0.9659
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	2.8	0.9665
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	4.5	0.9525
AT5G42710			unknown protein		Lus10016315 [exp]	5.0	0.9612
AT5G45840			Leucine-rich repeat protein ki...		Lus10031860 [exp]	6.6	0.9615
AT1G13635			DNA glycosylase superfamily pr...		Lus10019198 [exp]	7.1	0.9618
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	7.5	0.9551
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Lus10031290 [exp]	7.5	0.9511
AT1G47330			CBS domain-containing protein ...		Lus10032715 [exp]	8.9	0.9084
AT1G27920		MAP65-8	microtubule-associated protein...		Lus10015789 [exp]	10.2	0.9557

Compare expression of checked genes

Lus10010807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.