Plant FIBer expression Database

Lus10010808 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42740 440 / 3e-149 Sugar isomerase (SIS) family protein (.1)
AT4G24620 79 / 4e-15 PGI1 phosphoglucose isomerase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007154
[exp]
876 / 0 AT5G42740 953 / 0.0 Sugar isomerase (SIS) family protein (.1)
Lus10015959
[exp]
65 / 1e-10 AT4G24620 959 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10000767
[exp]
64 / 2e-10 AT4G24620 1018 / 0.0 phosphoglucose isomerase 1 (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G118900
[exp]
763 / 0 AT5G42740 973 / 0.0 Sugar isomerase (SIS) family protein (.1)
Potri.002G262101
[exp]
75 / 1e-16 AT5G42740 71 / 6e-16 Sugar isomerase (SIS) family protein (.1)
Potri.002G104000
[exp]
54 / 3e-07 AT4G24620 1006 / 0.0 phosphoglucose isomerase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00342 PGI Phosphoglucose isomerase
Representative CDS sequence
>Lus10010808 pacid=23170762 polypeptide=Lus10010808 locus=Lus10010808.g ID=Lus10010808.BGIv1.0 annot-version=v1.0
ATGGCTCCTTCGGCTCTGATATGTGATACTCAACCCTGGAAGGACTTGAAGGCACATGTTGAGGACATTAAGAAGACTCACCTGCGGGAGTTATTGAATG
ACAATGACCGATGCAAGGAAATGCTGCTTGAGTTCGACGGTATAACACTGGACTACTCCCGCCAGCAAGCCACTCTTGAAACATTGGATAAGCTGCAGAA
GCTGGCAGAGGGTGCACATCTGAAAGATAAGATCAAAAGCATGTTTAATGGTGATCATATAAATTGCACGGAGAATAGGTCAGTTCTCCATGTGGCTCTT
CGAGCTCCAAGAGATGCAGTAATTAACGGCGATGGCAAGAATGTTGTGCCAGATGTTTGGAATGTTTTGGACCAGATCAAGGATTTTTCTGAGAAAGTGC
GGAATGGTTCCTGGGTTGGAGCCACAGGAAAACCTTTAACCGATGTTATTTCTGTTGGCATTGGTGGCAGCTTTCTAGGTCCTCTTTTTGTGCATACTGC
CCTTCAAACAGTGCACCAGAATATTTATCATAAGGAAGAGTTATTTACTGGTAGAAACTTGCAGATCCGGAAGCCAGTAAGCAAGCAAAGGGGCGGCAAC
TGCGGTTGTAAGTACTTCTTTTTCTATCATCTTGGTTCTGCACAAGCTTCTAGAGGCAATTTTGTATGTCTTGCAAATGTGGATCCAATTGATGTTGCTA
GAAATATAACTGGCCTAAACCCTGAAACAACATTGGTTGTTGTGGTTTCAAAGACTTTCACCACTGCTGAAACAATGTTAAACGCTCGGACATTGAGAAC
TTGGATTTCAAAAGGACTCGGGTTCTTGAAAGGAGCTTGGAGCATTGATCAACACTTCTCTTCCGCACCATTTGAGAAAAATCTTCCAGTGCTCTTAGGT
CTATTGAGCGTGTGGAATGTTTCATTTCTTGGATACCCTGCGAGAGCCATCCTGCCTTATTCCCAAGCTTTGGAGAAATTTGCTCCTCATATCCAACAGG
TGAGAACAGCAGCTTGCACGTGTCCTGGGGTTAGCATGGAAAGTAATGGCAAGGGTGTCTCGATTGATGGGGTGCCACTTCCGCTCGAGACCGGTGAAAT
TGATTTTGGTGAGCCTGGAACAAATGGTCAACACAGCTTTTATCAACTAATTCACCAGGGACGAGTGATTCCTTGTGATTTTATTGGTGTTATAAAGAGT
CAGCAGCCAGTCTGCTTAGAAGAGGAGATCGTCAATAACCATGATGAACTCATGTCTAACTTTTTCGCTCAGCCAGATGCACTTGCATATGGAAAGACAC
CGGAACAGCTGCTAAAGGATAATGTGCCTGATCATCTTATTCCTCACAAGACCTTTTCTGGGAACAGACCCTCACTCAGCCTTTTGCTTTCTGGTTTGGA
TGCTTATAAAATTGGACAGTTGCTGGCGATCTATGAACATAGAGTAGCCGCACAAGGCTTCATATGGGGAATCAATTCATTCGACCAGTGGGGAGTCGAG
TTAGGGAAGTCGTTGGCTACTAAAGTTAGAAAGCAGCTCCATGCATCTCGAACGAAGAAAGAACAAGTCCAGGGCTTCAACTCCAGCACTACAAGATTGT
TGAACAAATACCTGGAGGAGAGCTCAGATGTTCCAGCTATTCCTTCAACCCTTCTTCCAAAGATATAA
AA sequence
>Lus10010808 pacid=23170762 polypeptide=Lus10010808 locus=Lus10010808.g ID=Lus10010808.BGIv1.0 annot-version=v1.0
MAPSALICDTQPWKDLKAHVEDIKKTHLRELLNDNDRCKEMLLEFDGITLDYSRQQATLETLDKLQKLAEGAHLKDKIKSMFNGDHINCTENRSVLHVAL
RAPRDAVINGDGKNVVPDVWNVLDQIKDFSEKVRNGSWVGATGKPLTDVISVGIGGSFLGPLFVHTALQTVHQNIYHKEELFTGRNLQIRKPVSKQRGGN
CGCKYFFFYHLGSAQASRGNFVCLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTLRTWISKGLGFLKGAWSIDQHFSSAPFEKNLPVLLG
LLSVWNVSFLGYPARAILPYSQALEKFAPHIQQVRTAACTCPGVSMESNGKGVSIDGVPLPLETGEIDFGEPGTNGQHSFYQLIHQGRVIPCDFIGVIKS
QQPVCLEEEIVNNHDELMSNFFAQPDALAYGKTPEQLLKDNVPDHLIPHKTFSGNRPSLSLLLSGLDAYKIGQLLAIYEHRVAAQGFIWGINSFDQWGVE
LGKSLATKVRKQLHASRTKKEQVQGFNSSTTRLLNKYLEESSDVPAIPSTLLPKI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42740 Sugar isomerase (SIS) family p... Lus10010808
[exp]
0 1
AT2G44990 MAX3, CCD7, ATC... carotenoid cleavage dioxygenas... Lus10021241
[exp]
8.4 0.9225
AT5G51500 Plant invertase/pectin methyle... Lus10031719
[exp]
10.5 0.9152
AT2G26060 EMB1345 embryo defective 1345, Transdu... Lus10021365
[exp]
14.6 0.9139
AT2G26060 EMB1345 embryo defective 1345, Transdu... Lus10017045
[exp]
17.5 0.9089
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10010936
[exp]
22.2 0.9026
AT1G62310 transcription factor jumonji (... Lus10020033
[exp]
28.2 0.8179
AT4G33070 Thiamine pyrophosphate depende... Lus10015291
[exp]
28.9 0.9022
AT4G34640 ERG9, SQS1 squalene synthase 1 (.1) Lus10017499
[exp]
34.4 0.8946
AT3G53250 SAUR-like auxin-responsive pro... Lus10009219
[exp]
36.4 0.8915
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Lus10043113
[exp]
36.4 0.9000

Lus10010808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.