Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46940 243 / 2e-82 DUT1 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007155 [exp] 352 / 1e-124 AT3G46940 269 / 4e-93 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261900 [exp] 258 / 9e-88 AT3G46940 259 / 6e-89 DUTP-PYROPHOSPHATASE-LIKE 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0153 [flax] [poplar] dUTPase PF00692 [flax] [poplar] dUTPase dUTPase
Representative CDS sequence Show only first row Show all	>Lus10010809 pacid=23170742 polypeptide=Lus10010809 locus=Lus10010809.g ID=Lus10010809.BGIv1.0 annot-version=v1.0 ATGGCGGGAAGAATTGGCGCCATTAATTTGGGATTTTCCTTCCCTCTATATAAACGATTACCCAATGACGCTGCTGTTGCTTCCTCACGGTGTTTCCAAG CCTCACTTTTCCGCAAATCCGTTATTACTCAAACCCTCCTCCAGAAGATGTCTCATCAAGCAGAGATCCAGAACGGAAGCCCTCAAATCCAGGAGCCCTC CCCCAAGATCCCCAAGCTGGACCACAAGAACGGTGTCCATGTCGCCGCCTCTTTCTTCTTCAAGGTGAAGAAGCTCTCCAAAAAGGCTGTCTTGCCCACA AGAGGCTCTCCTCTCTCCGCCGGCTACGATCTTTCCAGTGCGGCGGAAATGAAAGTGCCGGCGAGGGGAAAAGCCCTTATTCCAACAGACCTGAGCATCG CGGTGCCTGAAGGAACATATGCTCGGATCGCTCCGAGATCAGGACTTGCGTGGAAGCACTCGATCGACGTTGGAGCAGGTGTTATAGACGCAGACTACAG AGGTCCGGTTGGGGTCATACTGTTCAACTACTCGGACGTTGATTTTGAAGTGAAACAGGGCGATAGAATCGCACAGCTTATCATTGAGAGGATCATTACT CCCGAGGTTTTGGAAGTGGAAGATCTGGACGCCACCGTTAGAGGCGAAGGAGGCTTTGGTTCCACCGGCGTCTGA
AA sequence Show only first row Show all	>Lus10010809 pacid=23170742 polypeptide=Lus10010809 locus=Lus10010809.g ID=Lus10010809.BGIv1.0 annot-version=v1.0 MAGRIGAINLGFSFPLYKRLPNDAAVASSRCFQASLFRKSVITQTLLQKMSHQAEIQNGSPQIQEPSPKIPKLDHKNGVHVAASFFFKVKKLSKKAVLPT RGSPLSAGYDLSSAAEMKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNYSDVDFEVKQGDRIAQLIIERIIT PEVLEVEDLDATVRGEGGFGSTGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10010809 [exp]	0	1
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	4.2	0.9478
AT5G10400			Histone superfamily protein (....		Lus10031822 [exp]	5.1	0.9509
AT1G09200			Histone superfamily protein (....		Lus10005270 [exp]	6.1	0.9546
AT4G40030			Histone superfamily protein (....		Lus10013946 [exp]	10.5	0.9357
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	11.2	0.9425
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10000965 [exp]	11.7	0.8857
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	12.4	0.9356
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	15.9	0.9257
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	16.5	0.9298
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	17.5	0.9452

Compare expression of checked genes

Lus10010809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.