Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36660 108 / 3e-30 Protein of unknown function (DUF1195) (.1) AT5G65650 99 / 2e-26 Protein of unknown function (DUF1195) (.1) AT1G19380 72 / 2e-16 Protein of unknown function (DUF1195) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007156 [exp] 204 / 3e-68 AT4G36660 142 / 1e-43 Protein of unknown function (DUF1195) (.1) Lus10014322 [exp] 101 / 3e-27 AT5G65650 244 / 3e-83 Protein of unknown function (DUF1195) (.1) Lus10026030 [exp] 97 / 2e-25 AT4G36660 239 / 1e-81 Protein of unknown function (DUF1195) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G027700 [exp] 107 / 1e-29 AT5G65650 206 / 2e-68 Protein of unknown function (DUF1195) (.1) Potri.005G125000 [exp] 104 / 8e-29 AT5G65650 204 / 1e-67 Protein of unknown function (DUF1195) (.1) Potri.014G181600 [exp] 104 / 2e-28 AT4G36660 157 / 4e-49 Protein of unknown function (DUF1195) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06708 [flax] [poplar] DUF1195 Protein of unknown function (DUF1195)
Representative CDS sequence Show only first row Show all	>Lus10010810 pacid=23170748 polypeptide=Lus10010810 locus=Lus10010810.g ID=Lus10010810.BGIv1.0 annot-version=v1.0 ATGAAAGACACTATATCTCCCGCAGCAGTAACAGCTCCACTCCTCCCCACCACCTCTGCAAGGAGAGACAACCCAGATTCCAAAAGTGCTTACAAGTTGT GGGTCATCTCCATACTCCTCCTCCTCGCTTTCTGGTCCATGGTCACCGGCACCGTCACTCTCAAATGGTCTACTGGTAGCCTCACCCGTCTCTCCGACGA GCTTGACATACCCATCCACTATGATTTCGACGTCCTCGAAGTTGAGGAGAGGGAGAAAGTGGTGAAGCACATGTGGGATGTTTATATGCAGAGCAGCAGT AAGAAGAGGCTGCCTCGTTTCTGGGAAGAAGCTTTCGAAGCTGCTTATGAGGCTTTGGCTAGTGATTTGGCTACTATTCGTGATTCTGCTGTTTCTGAGA TCGCCAAGATGTCTCTTTTCTCTATTCATCTCCACCCCTTATCTGCTGTTAATGAGCAGCACCCTCTTGAATTCCTCTGTGGACATTGCTGGGTTTAA
AA sequence Show only first row Show all	>Lus10010810 pacid=23170748 polypeptide=Lus10010810 locus=Lus10010810.g ID=Lus10010810.BGIv1.0 annot-version=v1.0 MKDTISPAAVTAPLLPTTSARRDNPDSKSAYKLWVISILLLLAFWSMVTGTVTLKWSTGSLTRLSDELDIPIHYDFDVLEVEEREKVVKHMWDVYMQSSS KKRLPRFWEEAFEAAYEALASDLATIRDSAVSEIAKMSLFSIHLHPLSAVNEQHPLEFLCGHCWV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	0	1
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	1.0	0.8702
AT2G38480			Uncharacterised protein family...		Lus10012216 [exp]	4.5	0.8561
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	6.0	0.8462
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	8.5	0.8564
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	10.5	0.8468
AT3G06140			RING/U-box superfamily protein...		Lus10004419 [exp]	10.6	0.7711
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	10.9	0.8595
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	14.1	0.8022
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10014186 [exp]	19.0	0.8290
AT1G29800			RING/FYVE/PHD-type zinc finger...		Lus10029271 [exp]	20.3	0.8286

Compare expression of checked genes

Lus10010810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.