Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75160 484 / 1e-171 Protein of unknown function (DUF620) (.1) AT5G66740 417 / 1e-145 Protein of unknown function (DUF620) (.1) AT5G05840 380 / 7e-130 Protein of unknown function (DUF620) (.1) AT3G55720 319 / 4e-106 Protein of unknown function (DUF620) (.1) AT3G19540 292 / 5e-95 Protein of unknown function (DUF620) (.1) AT1G49840 285 / 5e-92 Protein of unknown function (DUF620) (.1) AT1G27690 275 / 8e-89 Protein of unknown function (DUF620) (.1) AT1G79420 238 / 1e-74 Protein of unknown function (DUF620) (.1) AT5G06610 209 / 3e-64 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007157 [exp] 733 / 0 AT1G75160 477 / 6e-169 Protein of unknown function (DUF620) (.1) Lus10026031 [exp] 407 / 2e-141 AT5G66740 643 / 0.0 Protein of unknown function (DUF620) (.1) Lus10014323 [exp] 408 / 2e-135 AT5G66740 650 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 384 / 1e-131 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 384 / 2e-131 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 293 / 2e-95 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 291 / 6e-95 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 253 / 1e-79 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 221 / 2e-70 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G181500 [exp] 526 / 0 AT1G75160 533 / 0.0 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 525 / 0 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1) Potri.007G027800 [exp] 416 / 4e-145 AT5G66740 645 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 397 / 5e-137 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 390 / 6e-134 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 300 / 3e-98 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 300 / 5e-98 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 290 / 3e-94 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G174200 [exp] 258 / 5e-83 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G081700 [exp] 254 / 1e-81 AT1G79420 522 / 0.0 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [flax] [poplar] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Lus10010811 pacid=23170747 polypeptide=Lus10010811 locus=Lus10010811.g ID=Lus10010811.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTATGTCCAAATTATGATAAAGAAGATGGGTTGGACACAATATTGGAGGTGCCGGTGCCAGAAGAAATGTTCACGAGCATGGGGAGTAACT CAGCCTCACGATGGCATAATATGAGGGCACTCATGAAGGCTGAGACTGTGGCAGATAAATTCAGCCATCTCCTCGCCAAATCCAACAGCGAGTTCTTGGC TCTTCTCAAGATTGTCGGTGCTCCTCTAATCCCTTTTCATATTCAACCAACCACTCCCTTCAATCATCCATTAGACAATCAATCTTCCATCGACTCATCG ACGGCAAGATACATAATGAAACAGTATATGGCGGCGACGGGAGGATCGACGGCTTTGAAGGCAATGCACAGCATGTACGCAATTGGGCAGGTGAAGATGA TTGGGTCAGAAATGCTTCAAGGGACAGAGGTTCATGTTGCGGGAAACTCAGAAGTAGGCGGTTTTGTTGTCTGGCAGAAGAATCCTGATTTATGGTACTT TGAATTAGTTGTCGCAGGCCACAAGGTTAGCACCGGCAGCGATGGCAAGATCACATGGAACCAATCTTATTCCCAGCCCGCCCATGCAAACCGTGGCCCC ACCCGCCCTATGCGCCGCTTCTTCCAGGGATTAGACCCTCGATGTATAGCCAAATTGTTCATAGATGCAACGTACATAGGAGAGGAGAAAATAAACGATG AAGACTGTTTTGTCCTCAAACTCGACACAGAGACTTCAATCCTCAAATTCCAAAGCTCCCCGAACACAGAGATCCTATATCACACGATTTGGGGGTATTT TAGTCATAGAACAGGGTTACTGGTGAAGTTTAGCGATACAAAACTGATAAAGATGATGAAATCAAGCACACGATCAGCAATAAACTGTGTGTTCTGGGAG ACGAGCATCGTTAGTGTGATCAGGGATTATAAATACATTGAAGGGATTAACATTGCACATAAAGGAGAGACTGTAACAACCCTTTTTAGGTATGGTGATT CAATACAACATCAACAGAGGAGAGTTGATGAGGTGTGGGAGATTGACGAGGTTGACTTCAATATCAAAGGATTGTCCGTAGATTATTTCTTACCACCATC TGATCTTAAAAGAGAGCCACTAGATCTTCAAGGTTAA
AA sequence Show only first row Show all	>Lus10010811 pacid=23170747 polypeptide=Lus10010811 locus=Lus10010811.g ID=Lus10010811.BGIv1.0 annot-version=v1.0 MRKLCPNYDKEDGLDTILEVPVPEEMFTSMGSNSASRWHNMRALMKAETVADKFSHLLAKSNSEFLALLKIVGAPLIPFHIQPTTPFNHPLDNQSSIDSS TARYIMKQYMAATGGSTALKAMHSMYAIGQVKMIGSEMLQGTEVHVAGNSEVGGFVVWQKNPDLWYFELVVAGHKVSTGSDGKITWNQSYSQPAHANRGP TRPMRRFFQGLDPRCIAKLFIDATYIGEEKINDEDCFVLKLDTETSILKFQSSPNTEILYHTIWGYFSHRTGLLVKFSDTKLIKMMKSSTRSAINCVFWE TSIVSVIRDYKYIEGINIAHKGETVTTLFRYGDSIQHQQRRVDEVWEIDEVDFNIKGLSVDYFLPPSDLKREPLDLQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75160			Protein of unknown function (D...		Lus10010811 [exp]	0	1

Compare expression of checked genes

Lus10010811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.