Plant FIBer expression Database

Lus10010813 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G42960 294 / 3e-102 unknown protein
AT1G45170 287 / 2e-99 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007162
[exp]
382 / 3e-130 AT5G42960 300 / 7e-98 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G181000
[exp]
315 / 1e-110 AT5G42960 331 / 7e-117 unknown protein
Potri.002G262700
[exp]
306 / 7e-107 AT1G45170 327 / 3e-115 unknown protein
PFAM info
Representative CDS sequence
>Lus10010813 pacid=23170739 polypeptide=Lus10010813 locus=Lus10010813.g ID=Lus10010813.BGIv1.0 annot-version=v1.0
ATGAAGGCCTCTTTCAAGGGAAGATACGACAACGGCAAGTCTACCGCCGCCACTACTCTTGTCCTTAACGCCGGCGATGTCAAGCTCCGAGCTTCCCTCA
CGGACGCCACCGTCACTAATGGCCCCAGCCTCAACGGTTTGGCTTTAGCCGTCGAGAAGCCCGGATTCTTCATCCTCGACTACAATGTCCCCAAGCAGGA
TGTCCGTTTTCAGTTCATGAATACTGTCAGGGTTGCAGATAAGCCCTTGAATCTGACTTACATCCACAGCAGAGGGGATAACAGGACTATGTTGGACGGA
AGCCTTGTAATTGATTCAGCTAACAAGGTTTCTGCTAACTATGTGGTTGGTACCAGCAACTGCAAGTTGAAGTACTCGTACAATCACGGAGGGTTGACCA
CATTCGAGCATACTTATGATTTGGCAAAGAATACATGGGATTTTGCAGTTTCGCGAAGAGTTTATCAGGATGATGTATGTAGGGCTACGTATCAAACCTC
AAGCAAGCTATTGGGATTAGAGTGGTCAAGGAATTCAAAGTTCAATGGGAAGTTTAAGGTAATGAGCTACTGTTTCATATACCAAACACTCTCGATTCTT
TCTGTTCTTATGGAATAG
AA sequence
>Lus10010813 pacid=23170739 polypeptide=Lus10010813 locus=Lus10010813.g ID=Lus10010813.BGIv1.0 annot-version=v1.0
MKASFKGRYDNGKSTAATTLVLNAGDVKLRASLTDATVTNGPSLNGLALAVEKPGFFILDYNVPKQDVRFQFMNTVRVADKPLNLTYIHSRGDNRTMLDG
SLVIDSANKVSANYVVGTSNCKLKYSYNHGGLTTFEHTYDLAKNTWDFAVSRRVYQDDVCRATYQTSSKLLGLEWSRNSKFNGKFKVMSYCFIYQTLSIL
SVLME

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G42960 unknown protein Lus10010813
[exp]
0 1
AT3G57490 Ribosomal protein S5 family pr... Lus10027358
[exp]
7.9 0.9385
AT2G04390 Ribosomal S17 family protein (... Lus10004208
[exp]
10.1 0.9292
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Lus10035414
[exp]
15.6 0.9240
AT1G23290 RPL27A, RPL27AB RIBOSOMAL PROTEIN L27A, Riboso... Lus10004617
[exp]
15.9 0.9215
AT2G01720 Ribophorin I (.1) Lus10040410
[exp]
16.2 0.9233
AT5G43960 Nuclear transport factor 2 (NT... Lus10024953
[exp]
19.7 0.9144
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Lus10031124
[exp]
24.1 0.9218
AT4G35490 MRPL11 mitochondrial ribosomal protei... Lus10031045
[exp]
25.5 0.9071
AT3G53630 unknown protein Lus10003983
[exp]
26.8 0.9032
AT2G40800 unknown protein Lus10030504
[exp]
28.7 0.9147

Lus10010813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.