Plant FIBer expression Database

Lus10010814 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75150 207 / 1e-56 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007162
[exp]
750 / 0 AT5G42960 300 / 7e-98 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G262800
[exp]
407 / 1e-130 AT1G75150 223 / 3e-62 unknown protein
PFAM info
Representative CDS sequence
>Lus10010814 pacid=23170764 polypeptide=Lus10010814 locus=Lus10010814.g ID=Lus10010814.BGIv1.0 annot-version=v1.0
ATGGACTCTGATGAAGAGTTTCTGCAATTCGCCGATGCCGAGGAAGCCCCTCCTTCTCCAGTTCCTCGAAGGAAGCTTAAACGTTTGAGGAAAGTTACCA
GCTTGAAGGATTCAGAGTATGCATCTCCTCGTCGACCCGTTGAAGACATTCCTGTGACTTCCACTTCCCCTTCTCTTTTTGAAACCCTAGTTTCGGCCGA
GAACCACGATGGATTCGAGGGGCTCAACTCCAGATCTGTGTTCGAGTCGATGAGTTTCGAGGAGGAGATTAATATGAATGATAGAGTTGCTAGTTTAGCT
ATGGGTGGACGAGTGACTGGTGTCAAAACGTTGTTGGAATATGGATCCGACGGCGAGGAACTTGACGGGGAAAATAGAGATCAAACGGCTAGCGTGGGTA
TGGATGAAGGAAATAGCGATTCCAAGACAGTGGATGCAGAGAACGAGCAGCATGCACTGGACGGAGACGAAGGAAAGAAAGGCAAGGCGAGGAAGAAGAA
GAAGAAATCTCGTGATGGTGATGATGAGAACGCAAGCTCAGGCGTCTCATCCAAGAGGGGAGGAGAGAAGGATAGGAGAAATCGTCTTAAGGAACTTCGT
GCTGAATCTCAGAGGTTGTTAAGAGAAACAAGAGATGCTTCGTTTAAACCTCAGCCTCTTGTTCAGAAGCCTGTTTCCACGGTTTTAGACAAGATTCGGC
AGAGGAGACTTGAGTTATCCAAAAGATCTGCCAGAGTAGATCCGGCTGATGACAATTGCGCTTCTCCTGGGGGTTTCTCCGTAAACCTGGATTTTGTTGA
TGATCAAGTTGAGGACATGGACTATCCATACTTTTCCACATCAGATGGTGTGAAAGTAGTGGACAAGCCTGCTGATATGGCAGAAAAGGCTGATGTTCCT
TATGAGGAAGGATTGAAGGATACTCCAAGTCCCGATACTGGAAGTTTGGCGCCTGAAATGGCCCTGGGAGAGGAACCAAAGCAAGCATTTCGAGCTCCTG
TTGATGATACCCAGGATCTCCTATTTGATTCACAAACAAGTGACAGTAAAGGTGACTTGTTGGATGAGACACCTAACAGTCCTCTAGAAGAAGTTTTTGC
CCCATCGTTACTCACAATGAATTTGAAATTTGACTCTGCTAACCCACATGATTTTTCCTCAGACGAAGAGGGAGACAATGACAAGGAAAATGTTGATCCC
CATCTTTCTGGGGCTGTTGAGTTGTCACGGGATCCAATGAAAGCTTTCATTGATGAGGAAGCTGAGGAAGAGGATGACAGTGATAATGATTTGCACCGCT
TCCAAAACAATGAGGAAGATGAGGATGACCTTGACTTGGAAGAGCTCAATGATATAATAGCAACTGGATATGAGGAGCAGCCTGTTGATGGAGAAATGCG
CAATGAACTTCATCAGAAGTGGCTTGAGCAACAGGATGCTGTTGGAACAGAACACCTCATGAAGAGACTCAACTGTGGCGGTTCCAAGCTGAAGGATCCA
ACATTGCTCGAGGAGAAAGAAGAGGGGAGTAATTGGGAAGGAGACTTTCTTGATAACACTGCAGAGGAAGGCCCTGTTACTAGAAATGTGATGCAAATGC
ACTTAAAGAAAGCCAAAGAGATGATCCACCAAATGTTTACAGATAATGATGATCTCTATGTTTCATCAGATGATGAGGAAACTGAAAGAAGCCTTGTGAA
ACAGCGGATGCTGGTCAATAGGGAACAGAAGGATGAAGCTCTGCTTGGACCACCAGCTGAGGATGAAAGCTCCAACGAGACATTTAGAATAAAGAAGATG
AACACTGTACTTGACAGTAAGAAGAAATCCAAGATAGCATCTTACTTTAATCAGCTATCTATTCGAGGCAACAAGGCTACAATGTCTAAGTCTTCTTTCT
TAAATCGTGGGGCGAAAAATGGAAATCAAACATTCCAAAAGAAGGGATCGACCATATTGCGGTCTTTCATCTTTGAAAGAGACGACAGCAATAATAGCAA
GGACACGGTTTCAATGATGGATGATTCTCCAGACTCGATTCACGAAGAGCAGAAAGCGAGGAAAGTCACGGCCACTAAGTTAATGAGCTCACAAATAAGA
TCATCGTCCAGCAGCAACAGCAGCAGCAGTAGTAGTCAAAAGGCTCAGGCTATTGGTCCATCGTTGCATGACATTCTAAGGGGGTCGAGGCGGAGCAATC
TGGCGGATGGTGCAGCTTTCCAAATTGAACCCAACAACATCTATACGGCTTTCAAGTTGGATCAGAGTTTGGTGAAGAGGTCAGTTGCTGCTGCGGTATC
TGTAAGAACGGTATAA
AA sequence
>Lus10010814 pacid=23170764 polypeptide=Lus10010814 locus=Lus10010814.g ID=Lus10010814.BGIv1.0 annot-version=v1.0
MDSDEEFLQFADAEEAPPSPVPRRKLKRLRKVTSLKDSEYASPRRPVEDIPVTSTSPSLFETLVSAENHDGFEGLNSRSVFESMSFEEEINMNDRVASLA
MGGRVTGVKTLLEYGSDGEELDGENRDQTASVGMDEGNSDSKTVDAENEQHALDGDEGKKGKARKKKKKSRDGDDENASSGVSSKRGGEKDRRNRLKELR
AESQRLLRETRDASFKPQPLVQKPVSTVLDKIRQRRLELSKRSARVDPADDNCASPGGFSVNLDFVDDQVEDMDYPYFSTSDGVKVVDKPADMAEKADVP
YEEGLKDTPSPDTGSLAPEMALGEEPKQAFRAPVDDTQDLLFDSQTSDSKGDLLDETPNSPLEEVFAPSLLTMNLKFDSANPHDFSSDEEGDNDKENVDP
HLSGAVELSRDPMKAFIDEEAEEEDDSDNDLHRFQNNEEDEDDLDLEELNDIIATGYEEQPVDGEMRNELHQKWLEQQDAVGTEHLMKRLNCGGSKLKDP
TLLEEKEEGSNWEGDFLDNTAEEGPVTRNVMQMHLKKAKEMIHQMFTDNDDLYVSSDDEETERSLVKQRMLVNREQKDEALLGPPAEDESSNETFRIKKM
NTVLDSKKKSKIASYFNQLSIRGNKATMSKSSFLNRGAKNGNQTFQKKGSTILRSFIFERDDSNNSKDTVSMMDDSPDSIHEEQKARKVTATKLMSSQIR
SSSSSNSSSSSSQKAQAIGPSLHDILRGSRRSNLADGAAFQIEPNNIYTAFKLDQSLVKRSVAAAVSVRTV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75150 unknown protein Lus10010814
[exp]
0 1
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10042967
[exp]
2.0 0.9461
AT5G52800 DNA primases (.1.2.3) Lus10038837
[exp]
2.0 0.9400
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10032469
[exp]
2.0 0.9565
AT1G09200 Histone superfamily protein (.... Lus10031250
[exp]
4.2 0.9434
AT1G69400 Transducin/WD40 repeat-like su... Lus10014343
[exp]
4.7 0.9216
AT1G67180 zinc finger (C3HC4-type RING f... Lus10034088
[exp]
4.9 0.9212
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10015820
[exp]
5.9 0.9310
AT3G17030 Nucleic acid-binding proteins ... Lus10016902
[exp]
6.6 0.9088
AT5G22110 DPB2, CYL2, DBP... CYCLOPS 2, DNA polymerase epsi... Lus10026361
[exp]
6.9 0.9155
AT1G67630 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA pol... Lus10036982
[exp]
8.5 0.9299

Lus10010814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.