Plant FIBer expression Database

Lus10010815 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G75140 577 / 0 unknown protein
AT1G19370 554 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007163
[exp]
1070 / 0 AT1G75140 646 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G180900
[exp]
659 / 0 AT1G19370 660 / 0.0 unknown protein
Potri.002G262900
[exp]
657 / 0 AT1G75140 645 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10010815 pacid=23170744 polypeptide=Lus10010815 locus=Lus10010815.g ID=Lus10010815.BGIv1.0 annot-version=v1.0
ATGGAAGGCACTCAGAAAACAGGCAAGTTGTTCTTCCTACTGCTCAATATTCTTATTCTAATACTCCTCTCTTCCCCACACCTAACTTACTCCTCCACCA
CCCAAGAGGAAGATGAATCTATCAAACCCGAGCCTGGAAACCAATTGATCCAACAACAGGAAGTTTTGCTACAGAGGATGGAAGAATTAGCCAGGAATTT
AAGCGATCTACTTTCTAGGTTAGAACCCTTGTTGTCTGAATCATCACCGCCGACCAAATCCGCTGAAAGCGGAAATAAGGTTAGGAATGAAAACAAAATG
AAACCGGTTTCCGTTACTAAGTACAGTACTCCTCTTTGGTCAGAGAGGTTTCAATTTGTTTCTGCTGTGAAATTGGATTCGATGGCGACATGTCTAAATG
TGTTGCCATTTCGAGATTCTGAAGGCCTCAGCAAGTACATTGCCGTTGGAGATGATCGAGGCAAGGTTTATTTGTTCTTGAAAAGTGGGGATCTCTTGAC
TGAGTTTGACACCTTGGTGGATTCTCCTGTCACCGCCATCGTCTCTTACCTTTCCGTTTACAAGAACGAGAGCGTTTTGGTGACGGGTCATCAGAATGGC
GAGATTCTAGGGCACAAGATCGTGGAGCGATCCAATGGGGAAGAGTTCACAACCTCTTTGGTCATGGAAAGTGTATTCAAGTTCATGAATGGGGAGGAAG
GTTTGGCCGTGGGGACTCTGGACGTTCACCATGTCGGGAGGTTGAGGTACATTTTGTCATCTGCTGCGAGTGGCACGATCACGGTTTTCAAAGAGGATGG
GAAGCTTCACGGCTCGGTCACACCATCGAGCAGACCCCTCGCGTTCTTGAAGCAAAGGTTGTTGTTCTTGACAGAAAGTGGCGCAGGGTCGTTGGATTTG
AGGAGCATGAAGATTCGGGAATCTGAATGTGAAGGATTGAATCATTCCCTTGTTCGAAACTATGTGTTTGATGTCACTGAAAGATCCAAGGCGTATGGAT
TCACGTCGGATGGACATTTGATTCATGTTCTATTATTAGGAGATGCGATGAATTTCAAGTGCAGGGTTAGGTCGAAGAAGAAGCCAGAAAAGATTGATGA
ACACCCCGTTGCGGCTATGCAGGCCATTAAAGGATATCTGCTTCTTGTCAGCGAAGAAAGCGTCTTTGTGTACAATGTTTCCTCGCATCATTATGTCCGA
GTCGGTGGCCCTCGGCCGATCTTCTCTGCTGGTTTGGATGAGATCAGATCATCATTTCTGAGTTATCAACTCACAGGTGCAGAAATCGATTCACCAAAGG
CAATGCCATTGATAGCAAGTGATCGCGAAAAGCTAGTTGTTGTTGGACTAGGGAATGGTTATGTAGGGATATATCATTCTAGCCTCCCTGTGTTCAAAGG
AGAGTTCAACACAATGCTGTGGACAAGTCCTGTACTGATCTTCATCCTCTTCCTGTTTGGGGCATGGCAATTCTTTGCCAAGAAAAAGGAAGCTCTTACT
TCATGGGGGCCGGACGATCCTTTTACAACCAACAACACATCATCTGCGGCCAACTCTACCCCTATAGGGTCCGGTGAGCGGTCATTTGTAGAGCAGCCTT
CTTCAAGGAGTGGTGGTGGTGGGATCATGGACTTGAGAGCTGATGGGATCCGAGGGCCACCAAGGAGGTATGCTTCTCCACCTCGGTATGCAGGTGGGAC
GACAGCGAGCGGTTTTAGGCCAGGTTCGGTTGATGCCATACCTTCGAGACCTAGCTCAGTTGATCCGAATTACAGAACGTCTTCTTCAGAACTCAAGTAT
AGAGCGGCACATATGGAGCCACCAGGTTTCCCTAAAAGAAGGGAGAATATGTTTGTGAACAACCAGGATGTTGATGAAGGAAACTAA
AA sequence
>Lus10010815 pacid=23170744 polypeptide=Lus10010815 locus=Lus10010815.g ID=Lus10010815.BGIv1.0 annot-version=v1.0
MEGTQKTGKLFFLLLNILILILLSSPHLTYSSTTQEEDESIKPEPGNQLIQQQEVLLQRMEELARNLSDLLSRLEPLLSESSPPTKSAESGNKVRNENKM
KPVSVTKYSTPLWSERFQFVSAVKLDSMATCLNVLPFRDSEGLSKYIAVGDDRGKVYLFLKSGDLLTEFDTLVDSPVTAIVSYLSVYKNESVLVTGHQNG
EILGHKIVERSNGEEFTTSLVMESVFKFMNGEEGLAVGTLDVHHVGRLRYILSSAASGTITVFKEDGKLHGSVTPSSRPLAFLKQRLLFLTESGAGSLDL
RSMKIRESECEGLNHSLVRNYVFDVTERSKAYGFTSDGHLIHVLLLGDAMNFKCRVRSKKKPEKIDEHPVAAMQAIKGYLLLVSEESVFVYNVSSHHYVR
VGGPRPIFSAGLDEIRSSFLSYQLTGAEIDSPKAMPLIASDREKLVVVGLGNGYVGIYHSSLPVFKGEFNTMLWTSPVLIFILFLFGAWQFFAKKKEALT
SWGPDDPFTTNNTSSAANSTPIGSGERSFVEQPSSRSGGGGIMDLRADGIRGPPRRYASPPRYAGGTTASGFRPGSVDAIPSRPSSVDPNYRTSSSELKY
RAAHMEPPGFPKRRENMFVNNQDVDEGN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G75140 unknown protein Lus10010815
[exp]
0 1
AT5G52510 GRAS SCL8 SCARECROW-like 8 (.1) Lus10039265
[exp]
1.4 0.8728
AT3G14580 Pentatricopeptide repeat (PPR)... Lus10026191
[exp]
4.4 0.7974
AT2G04620 Cation efflux family protein (... Lus10013358
[exp]
4.5 0.8600
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Lus10029216
[exp]
4.5 0.8511
AT4G15415 ATB'GAMMA, ATB'... Protein phosphatase 2A regulat... Lus10014619
[exp]
8.2 0.8066
AT2G37250 ADK, ATPADK1 adenosine kinase (.1) Lus10023476
[exp]
8.5 0.7895
AT4G14930 Survival protein SurE-like pho... Lus10004909
[exp]
12.0 0.8303
AT1G15130 Endosomal targeting BRO1-like ... Lus10034634
[exp]
13.0 0.8201
AT2G34180 ATWL2, CIPK13, ... SNF1-RELATED PROTEIN KINASE 3.... Lus10025396
[exp]
13.0 0.8120
AT5G08530 CI51 51 kDa subunit of complex I (.... Lus10036999
[exp]
13.9 0.8524

Lus10010815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.