Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42970 654 / 0 FUS4, EMB134, CSN4, COP14, FUS8, COP8, ATS4 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007164 [exp] 666 / 0 AT5G42970 563 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G263200 [exp] 716 / 0 AT5G42970 700 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.014G180800 [exp] 715 / 0 AT5G42970 695 / 0.0 FUSCA 8, FUSCA 4, EMBRYO DEFECTIVE 134, COP9 SIGNALOSOME SUBUNIT 4, CONSTITUTIVE PHOTOMORPHOGENIC 8, CONSTITUTIVE PHOTOMORPHOGENIC 14, Proteasome component (PCI) domain protein (.1) Potri.007G076900 [exp] 41 / 0.0009 AT5G09900 729 / 0.0 REGULATORY PARTICLE NON-ATPASE SUBUNIT 5A, MARIPOSA, EMBRYO DEFECTIVE 2107, 26S proteasome regulatory subunit, putative (RPN5) (.1), 26S proteasome regulatory subunit, putative (RPN5) (.2), 26S proteasome regulatory subunit, putative (RPN5) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10010816 pacid=23170763 polypeptide=Lus10010816 locus=Lus10010816.g ID=Lus10010816.BGIv1.0 annot-version=v1.0 ATGGAGAGCGCCTTCGCAACCGCCTCGGCGATCACGGACCAGAGGCAAAAGATCGAGCAGTACAAGCACATTCTCTCCTCCGTCATCTCCTCCAACGACA TTGTTCTCGCCAAGAAGTTTATCGATCACATGCTATCTGACGATGTTCCATTAGTCGTATCGAGGCAGCTCTTGCAGACTTTTGCTCAAGAGCTGGGAAG ACTGCAGCCTGAAGCTCAAAAGGATATTGCTCATTACACTCTTGCTCAGATTCAGCCCCGGGTGGTTTCCTTCGAAGAACAGGTGTTAACTATCAGAGAG AAACTTGCTGAGCTATATGAATCGGAACAGCAGTGGTCAAGAGCAGCACAGATGCTGAGTGGAATTGATTTGGACTCTGGAATGAGGGTCATTGATGATA CCTATAGGTTGTCAAAGTGTGTCCAAATTGCTCGACTGTATCTTGAGGATGATGATGCTGTCAATGCTGAGGCATTCATCAACAAAGCTTCATTTTTGGT TAGCAACAGCCAACATGAAGTATTGAACTTACAATACAAGGTTTGTTATGCGAGAATTTTAGATTTGAAGAGGAAGTTTTTGGAGGCTGCATTACGTTAT TATGACATATCACAAATTGAGAAGCGACAAATAGGAGATGAAACCATTGACGAGGATGCATTAGAGCAAGCACTGACTGCTGCTGTAACATGTACAATCT TGGCTGCGGCTGGCCCTCAACGTTCCCGTGTCCTGGCCACTTTGTACAAGGATGAGAGATGCTCAAAGCTAAAAATTTATCCTATACTACAAAAGGTATA CTTGGAAAGGATTCTTAGGAGACCTGAAATTGATGCATTTTCTGAAGAACTAAAGCCGCATCAGAAAGCGCTGCTTCCAGATAACTTCACTGTCCTTGAT CGAGCTATGATCGAGCACAATCTTCTGAGTGCAAGCAAACTATATACAAACATAAGCTTTGACGAGTTAGGCACCTTGCTGGGTATACCTTCACATAAGG TGGAAGCCGTCATACATTTTGAGGATGACACGGAAGAGCTTCAGCAATGGGATCAACAGATTGTTGGGTTGTGTCAAGCACTAAATGATGTCCTGGATAG CATGGCGAAGAAGGGTTTGGCAATCCCAGTCTAG
AA sequence Show only first row Show all	>Lus10010816 pacid=23170763 polypeptide=Lus10010816 locus=Lus10010816.g ID=Lus10010816.BGIv1.0 annot-version=v1.0 MESAFATASAITDQRQKIEQYKHILSSVISSNDIVLAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLQPEAQKDIAHYTLAQIQPRVVSFEEQVLTIRE KLAELYESEQQWSRAAQMLSGIDLDSGMRVIDDTYRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYKVCYARILDLKRKFLEAALRY YDISQIEKRQIGDETIDEDALEQALTAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELKPHQKALLPDNFTVLD RAMIEHNLLSASKLYTNISFDELGTLLGIPSHKVEAVIHFEDDTEELQQWDQQIVGLCQALNDVLDSMAKKGLAIPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10010816 [exp]	0	1
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	2.0	0.8855
AT1G07970			unknown protein		Lus10023345 [exp]	4.6	0.9088
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10039885 [exp]	8.8	0.8670
AT5G53620			unknown protein		Lus10032948 [exp]	12.3	0.8953
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10016246 [exp]	13.5	0.8555
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10003954 [exp]	14.6	0.8926
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	14.9	0.8489
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10039590 [exp]	16.0	0.8854
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	17.4	0.8292
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Lus10007164 [exp]	24.5	0.8247

Compare expression of checked genes

Lus10010816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.