Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50700 346 / 3e-118 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 342 / 7e-116 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 328 / 3e-110 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 319 / 2e-107 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT1G55110 318 / 6e-107 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G13810 313 / 1e-104 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT1G14580 311 / 2e-104 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT4G02670 310 / 2e-104 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT5G03150 311 / 7e-104 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 307 / 5e-103 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007168 [exp] 435 / 4e-152 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 327 / 1e-109 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 316 / 5e-106 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 316 / 7e-106 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 315 / 1e-104 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004497 [exp] 312 / 2e-104 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10029904 [exp] 309 / 1e-103 AT1G55110 337 / 6e-112 indeterminate(ID)-domain 7 (.1) Lus10041356 [exp] 322 / 2e-103 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004840 [exp] 310 / 9e-103 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180600 [exp] 353 / 6e-120 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 343 / 8e-116 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.002G263600 [exp] 340 / 3e-115 AT3G50700 337 / 4e-111 indeterminate(ID)-domain 2 (.1) Potri.005G125600 [exp] 336 / 4e-113 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 333 / 3e-112 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 332 / 8e-112 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 327 / 2e-110 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.005G027200 [exp] 328 / 3e-110 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.007G135000 [exp] 327 / 4e-110 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.003G036900 [exp] 328 / 9e-110 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010820 pacid=23170756 polypeptide=Lus10010820 locus=Lus10010820.g ID=Lus10010820.BGIv1.0 annot-version=v1.0 ATGGCGGAGGTTGAGAATTCGTCTAAAGTGACGGTCTCTGCTGCAGCAGCTTTGTCTGGCGAAGCAAACAGCGTATCTTCCTTCGGAAACCAACCCACAA CTACGACGAAGAAGAAGCGGAATCTCCCCGGAATGCCAGATCCAGAAGCTGAAGTAATCGCGTTATCCCCCGTGTCGTTGCTGGCGACCAACAGATTCGT GTGCGAGATCTGCAGTAAAGGATTTCAGCGAGACCAGAACCTGCAGCTCCACCGACGAGGCCACAACTTGCCCTGGAAGCTAAAGCAGCGGAGCAGCAAG GAGCTGAGGAAGCGGGTCTACGTTTGCCCCGAACCGAGTTGCGTACACCACGACCCGGCCCGAGCTCTGGGGGACCTGACCGGAATCAAGAAACACTTCT GCAGGAAACACGGGGAGAAGAAGTGGAAGTGCGAGCGTTGCACGAAGAAGTACGCCGTCCAGTCCGATTGGAAAGCTCATATGAAGACCTGTGGGACTCG CGAGTATAAATGCGATTGCGGAACTTTGTTCTCAAGGAGGGACAGCTTTATCACGCACCGGGCATTCTGTGACGCTCTGGCGGAGGAGAGCATAAGAAGC AATAATGCCCCCCGAACAGTAACCAACAGCAACCCTAGTCCGACGGTGGTTGCTTCCCCTCCGCCGCCTCCTCATACGCCGTCCACCAACGTTGTTTCCC CTGGCAACTCAGTCCAGAGCTCAGGATTGGCAGAGAATAATCCGGCAGCTTTGGCTTCTCCACCTGCAACAACCACGGCTGGAGTGACCAACACAAACTT CACTTGCACAGCTTCACCAACAAACGTCTTCGCCTGA
AA sequence Show only first row Show all	>Lus10010820 pacid=23170756 polypeptide=Lus10010820 locus=Lus10010820.g ID=Lus10010820.BGIv1.0 annot-version=v1.0 MAEVENSSKVTVSAAAALSGEANSVSSFGNQPTTTTKKKRNLPGMPDPEAEVIALSPVSLLATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRSSK ELRKRVYVCPEPSCVHHDPARALGDLTGIKKHFCRKHGEKKWKCERCTKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESIRS NNAPRTVTNSNPSPTVVASPPPPPHTPSTNVVSPGNSVQSSGLAENNPAALASPPATTTAGVTNTNFTCTASPTNVFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10010820 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10023240 [exp]	7.1	0.7912
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	8.0	0.8029
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	16.8	0.7736
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	22.2	0.7260
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	24.0	0.7568
					Lus10010102 [exp]	37.3	0.7288
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	40.5	0.7491
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10028360 [exp]	42.3	0.7385
AT5G66730	C2H2ZnF	IDD1, ENY	INDETERMINATE DOMAIN 1, ENHYDR...		Lus10007168 [exp]	61.9	0.6877
AT4G02100			Heat shock protein DnaJ with t...		Lus10002438 [exp]	81.7	0.6907

Compare expression of checked genes

Lus10010820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.