Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 496 / 2e-172 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 383 / 5e-128 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 345 / 2e-113 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14690 342 / 3e-112 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14630 340 / 3e-111 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14680 338 / 2e-110 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14660 336 / 7e-110 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14620 328 / 7e-107 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14640 323 / 1e-104 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14650 322 / 4e-104 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016310 [exp] 662 / 0 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 480 / 1e-168 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 383 / 2e-127 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 340 / 6e-111 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10019177 [exp] 337 / 3e-110 AT2G26710 373 / 4e-124 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 337 / 6e-110 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026085 [exp] 337 / 7e-110 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10042487 [exp] 333 / 3e-108 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036817 [exp] 346 / 7e-108 AT2G26710 382 / 3e-121 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035200 [exp] 605 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 570 / 0 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 548 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 531 / 0 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043100 [exp] 525 / 0 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 496 / 4e-172 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 382 / 2e-127 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 380 / 1e-126 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139400 [exp] 353 / 2e-116 AT2G26710 402 / 2e-135 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 348 / 2e-114 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10010821 pacid=23170773 polypeptide=Lus10010821 locus=Lus10010821.g ID=Lus10010821.BGIv1.0 annot-version=v1.0 ATGTCCCTTCTCCATCTCCCGTTTCTCGCCGCCGGCGCCTTAATCATCATCACCATTATAATTAAAACAGCATACTCCGTCCTCTGGCTCCCCTTCCGCA TTCAGCGTCAGTTTAACAGCCAGTCCATAACCGGCCCCGATTACGTTCCGATATCCGGAAACTCAGCCGAGACATCCCGTCTCTTTGCCCGCGCTCATTC CGAGAAATTCAAGTCCATGTCGTCGGAGGGAGGATTCCACCACCGGAATGTGCTGGCGAGGGCGTCCCCATATTACCACGAGTGGGCCCGCATGTACGGG AAGACTTTCCTATACTGGTTCGGAATAAAGCCCAGGTTGGTGATATCCAGGCCGGACGACGTTAAGGAAGTAATGCTGAACACGAGCGGATCTTTTGGAC CGGTTCCGTTTAACCCGTTGTCCAAGTTATTGTTCGGTCAGGGCCTTGTTGGGCTTCAAGGTGATAAATGGGCCCTTCATCGACGGATCATCACTCCAGC CTTCAACATGGAGCGAGTCAAGGAATGGGTGCCAGAGATAGTGAGCTGCACCAAGAAAATGTTGGAGAAACTTGAGGAGATACAAGGAGAAAGAGAAGAG TTTGAGGTTGACGTTCACAAAGAGTTCCACCAACTGTCTGCTGACGTGATCTCACGAACAACACTGGGGAGCAGCTTCGAAGAGGGAAAACGAATCTTCG CACTCCAGGACCGGCAAGCCCAGCTTGTTGCTCAGGCAATCGGCAGCGTCTACATTCCTGGGTTCAGGTTCTTACCCACCAAAAAGAACAAGGAGAGATC CAGATTGGAAAAGGAAATACGAGACTCCATTAGCGCGTTGATCATTCATGATCACAAAAACACTACTGCTACTACTGCAACAGAAAACTCCTCTAGGAAC CTTGTTGAATTACTAATGTCTCCCTACAAGCAGGACGGGAAAGAGGAGAGATTGGACGTTGAAGAAGTGATAGACGAATGCAAGACATTTTACTTCGCAG GGAAAGAGACTACTGCCAATCTCTTGACTTTCGCTCTCCTCTGCTTGGCCAATCATCAAGAATGGCAGGACAAGGTTCGTGACGAAGTTCTCAATGTCCT TGGGAACCTCGACATTTCTTCAGCTGGAGTCAATCTAAACGACCTTAAGACTTTGGGTCTTGTTATCAATGAAACTTTAAGGATGTATCCTCCCGCTGTG TTTCTATTAAGGGAGGTGAAGAAGAAAGTGAAGCTAGGAATGATGGAAATTCCGAAAGGAACACAATTTCATATACCTATAATGGGGATTCATTACGACC CTGAAATATGGGGAGAAGACGCATGTGAGTTCAATCCACTACGATTCAATGAGTCAAAAACAAAACATTTAGCAGCTTATTTTCCATTTGGGATGGGTCC TAAAATCTGCGTAGGCCAAAATTTAGCAATGGTGGAAATCAAGATAGTGTTGGCTACGATCATAAGGAAGTACTCTTTTATACTATCTCCAACTTATGTT CACGCTCCTTTCAATTTTCTCAGTTTGGAGCCTCGACATGGGGCTCAATTGGTGTTTAGGAAGCTTTTATAA
AA sequence Show only first row Show all	>Lus10010821 pacid=23170773 polypeptide=Lus10010821 locus=Lus10010821.g ID=Lus10010821.BGIv1.0 annot-version=v1.0 MSLLHLPFLAAGALIIITIIIKTAYSVLWLPFRIQRQFNSQSITGPDYVPISGNSAETSRLFARAHSEKFKSMSSEGGFHHRNVLARASPYYHEWARMYG KTFLYWFGIKPRLVISRPDDVKEVMLNTSGSFGPVPFNPLSKLLFGQGLVGLQGDKWALHRRIITPAFNMERVKEWVPEIVSCTKKMLEKLEEIQGEREE FEVDVHKEFHQLSADVISRTTLGSSFEEGKRIFALQDRQAQLVAQAIGSVYIPGFRFLPTKKNKERSRLEKEIRDSISALIIHDHKNTTATTATENSSRN LVELLMSPYKQDGKEERLDVEEVIDECKTFYFAGKETTANLLTFALLCLANHQEWQDKVRDEVLNVLGNLDISSAGVNLNDLKTLGLVINETLRMYPPAV FLLREVKKKVKLGMMEIPKGTQFHIPIMGIHYDPEIWGEDACEFNPLRFNESKTKHLAAYFPFGMGPKICVGQNLAMVEIKIVLATIIRKYSFILSPTYV HAPFNFLSLEPRHGAQLVFRKLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010821 [exp]	0	1
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10006925 [exp]	1.0	0.8692
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	2.0	0.7758
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	5.0	0.7656
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	6.3	0.7667
AT1G02810			Plant invertase/pectin methyle...		Lus10010309 [exp]	6.5	0.7686
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10025979 [exp]	8.9	0.7028
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	10.5	0.7323
AT3G54040			PAR1 protein (.1)		Lus10017196 [exp]	14.7	0.7457
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	15.9	0.6876
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10041290 [exp]	16.0	0.7004

Compare expression of checked genes

Lus10010821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.