Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15220 189 / 1e-62 Ribosomal protein L27 family protein (.1) AT2G16930 187 / 8e-62 Ribosomal protein L27 family protein (.1.2.3) AT5G40950 90 / 5e-23 RPL27 ribosomal protein large subunit 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007170 [exp] 291 / 2e-103 AT5G15220 190 / 3e-63 Ribosomal protein L27 family protein (.1) Lus10041553 [exp] 98 / 4e-26 AT5G40950 241 / 2e-81 ribosomal protein large subunit 27 (.1) Lus10012538 [exp] 94 / 1e-24 AT5G40950 243 / 2e-82 ribosomal protein large subunit 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G009500 [exp] 228 / 4e-78 AT5G15220 201 / 2e-67 Ribosomal protein L27 family protein (.1) Potri.001G329500 [exp] 97 / 6e-26 AT5G40950 253 / 2e-86 ribosomal protein large subunit 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01016 [flax] [poplar] Ribosomal_L27 Ribosomal L27 protein
Representative CDS sequence Show only first row Show all	>Lus10010822 pacid=23170736 polypeptide=Lus10010822 locus=Lus10010822.g ID=Lus10010822.BGIv1.0 annot-version=v1.0 ATGTTCAATTTCACCTCAAGGATCTGTAGAGGCTTCAGTGTGAAGGATTTGGTCAGTAGCGCACCAGTCTACGAAACCTTCACCGATGTGTCCACCGGCG GCAGCGGCCTTAATGTGATGTTCCGGAGATGGGCTACGAAGAAAACCGCAGGGTCGACGAAGAACGGAAGAGATTCCAAGCCCAAGTATCTTGGAGTGAA AAAATTCGGCGGGGAGAGAGTAATTCCTGGGAATATCATAGTGAGGCAGAGAGGGACTCGGTTTCATCCTGGGAACTATGTGGGGATTGGTAGAGATCAT ACTCTGTTTGCGCTCAAGGAAGGAAATGTCAAGTTCGAGACGCAGAAACTAACCGGCAGGAAATGGGTTCATGTTACCCCCAAGGAAGGCTATGATCTCC ACCCTGTATATCAAGCAGATGGAATCTCTGCTTCTGCTTAA
AA sequence Show only first row Show all	>Lus10010822 pacid=23170736 polypeptide=Lus10010822 locus=Lus10010822.g ID=Lus10010822.BGIv1.0 annot-version=v1.0 MFNFTSRICRGFSVKDLVSSAPVYETFTDVSTGGSGLNVMFRRWATKKTAGSTKNGRDSKPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGRDH TLFALKEGNVKFETQKLTGRKWVHVTPKEGYDLHPVYQADGISASA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15220			Ribosomal protein L27 family p...		Lus10010822 [exp]	0	1
AT1G16000			unknown protein		Lus10023116 [exp]	1.4	0.7687
AT3G59040			Tetratricopeptide repeat (TPR)...		Lus10005058 [exp]	4.6	0.6890
AT4G26210			Mitochondrial ATP synthase sub...		Lus10040553 [exp]	5.3	0.7063
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	7.5	0.7430
AT5G42520	BBR_BPC	BPC6, BBR/BPC6,...	ARABIDOPSIS THALIANA BASIC PEN...		Lus10012389 [exp]	11.0	0.6748
AT5G46160			Ribosomal protein L14p/L23e fa...		Lus10023296 [exp]	11.0	0.7405
AT1G26750			unknown protein		Lus10016383 [exp]	28.7	0.6971
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10038965 [exp]	31.5	0.6581
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10005043 [exp]	32.4	0.6711
AT4G31460			Ribosomal L28 family (.1)		Lus10003683 [exp]	32.7	0.6500

Compare expression of checked genes

Lus10010822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.