Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16250 578 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G39270 534 / 4e-177 Leucine-rich repeat protein kinase family protein (.1.2) AT5G25930 189 / 2e-49 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G73080 176 / 4e-45 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G75820 169 / 8e-43 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 166 / 6e-42 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 164 / 3e-41 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 161 / 2e-40 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G08850 150 / 5e-37 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT2G23950 146 / 2e-36 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040455 [exp] 627 / 0 AT2G16250 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023570 [exp] 625 / 0 AT2G16250 920 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007171 [exp] 302 / 7e-97 AT2G16250 206 / 4e-63 Leucine-rich repeat protein kinase family protein (.1) Lus10006028 [exp] 197 / 8e-52 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 192 / 3e-50 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10031689 [exp] 177 / 3e-45 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10037358 [exp] 172 / 8e-44 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 171 / 9e-44 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009394 [exp] 166 / 1e-41 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G196600 [exp] 808 / 0 AT2G16250 741 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G260100 [exp] 784 / 0 AT2G16250 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G155100 [exp] 665 / 0 AT2G16250 921 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.009G116300 [exp] 645 / 0 AT2G16250 886 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G057100 [exp] 194 / 7e-51 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 189 / 2e-49 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 184 / 9e-48 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.005G198000 [exp] 183 / 2e-47 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G130400 [exp] 182 / 4e-47 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2) Potri.002G063300 [exp] 176 / 4e-45 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10010823 pacid=23170741 polypeptide=Lus10010823 locus=Lus10010823.g ID=Lus10010823.BGIv1.0 annot-version=v1.0 ATGGAATATCTCCGACTCCGGGTAGCTCTTCTTATATGGGCTTTGATTCACTGCACGGCGACGCAGCAGAGTAGTGTGTTGCTAAGCTCCAGGAGGGAAT GGACGGCCTTGATACATCTCCGAGGTTCGTTAGGAGTTAGAAGCGTTGATTGGTCGATAAAAGCCGACCCATGTACAAGTTGGAAAGGAGTTGACTGTAA TGGGGACGGCCGGGTCATCGGGATCAACATCTCCGGGTTCAGGAGGACTCGAATCGGGAGTTCGGATCCCGGGTTCACCGTCGATTCCCTGGCGAATCTC ACTTCCTTAGAGGTGTTCAATGCATCAAGGTTCCCGCTTCCGGGTTCTATCCCGGACTGGTTGGGTCCACGGCTCGGGTCTTCACTCCGAGTGCTGGACC TCCGGTCGAGTTCAGTCACCGGTTCGATTCCTAATTCGCTGGGAGAGTTGTCACATTTGAATGCTCTGTATCTGTCTGATAATGAGCTTGTTGGTTCGTT GCCTGATGAATTGGGGAAGTTAACGCAAATCTCAGTTGTCGACCTTTCTAGGAATTTGCTTACTGGGTCCATACCTGATGGTTTCGCCTCACTTACTAAC CTATCAAGGCTGAACCTTTCTTCCAATTACATATCTGGGTCGATTCCTCTGGGGTTTGAAAACGCTTCTTGGCTGCAACTCTTGGATTTATCAGACAATA GTCTGACCGGTTTTATTCCGGATGGTTTGGGTAGCTTGTCTCAATTGATTGAGCTCAATCTGGGTAAGAATTCTCTGTCAGGGTGTTTATCAAGTGGCTT GGTTTCCAGATTTGAAAGATTGCAAGTAGTGAATCTAAGCGGTAATAAATTTGAGGGTACACTTCCCAGTACGTTCCGGTCACTGCCTGATTTGCAGTTT CTGGATTTATCTAGCAACAATTTCACTGGTGATGTACAGACCACCTTTCCTTTGAATGGCATTAATGATAGTACTAGTACAGCCATGTTCAATCTCTCCA ACAATCTCTTGTATGGAACCCTGCCTTCTTCTCCGTTCCATAACTCGACTTTGGTTGATCTATCTGGGAACTACATCCAAGGGAAGGTCCCTACTGGTAC AAAAAATGTGATTCTCAACTCAAACTGTCTTCAAGCTATTTCCAGCCAGAGGAGTTTGGTGGATTGCAGGTCTTTTTATGACGAAAGAAGACTATCTTTC GACGATTTTGGAGGACCAGCACCATCTCTGCTTTCATCTCCCAAAGCAAGTAAACGATGGATATACATCTTAGTAGGAGTGGTTGTTGGTATTGGCTTCA TTGCCCTAATTGCTCTTGTTATGGTATTGTGCATTAGGAAGTTTGACAAGAAGGGTTCATCTCCAAGAGGGAGTGCAAATGTCGGACCTGTTCCTGAAAC AGATATTCATCCATCAACCGCTCATATATTATCAGATCTCGGGGAATCGTTCACATACGATCAGTTGCAACGTTTGGCCGGCAACAAGAACCTTATCAAG AACGGTCATTCTGGAGATCTGTTCCAAGCTTTCCTTGGAGAAGGTGGTGCTCCCATTGTAGTGAAAAGAGTTGATGTGAAGAAGGAATCATTGTACATGA TGGAGTTGGAATTCCTCAGCAAGTATTCACATGCGAGACTAGTACCACTCCTGGGGCAGTGTTTAGAGAATGAGAATGAGAAGTTTCTTGTCTACAAATA TATGCCAAATAGGGACTTGGCTAGTTCGCTACACAGGGTAGTAGTAAGCAATTCTGAAGAAGATGGTTTGCAGTCGTTGGATTGGATTACAAGGTTGAAA ATAGCTATAGGAGCTGCTGAAGCCCTTTGTTTCCTGCACCATGAGTGTAATCCTCCTGTTGTTCATAGGGATGTGCAAGCTAGTAGTATCCTTCTTGATG ATAAGTTCGAGGTTCGACTTGGAAGCTTAAGTGAGATTCGGGTCCAGGAAGGCGAATCACACCACAGCAAGATCATCACAAGATTCTTGCGAAAGCAACT ATCATCTGAATCAGGCTCCTCTGGCGCATTAATGGCAACTTGTGCGTACGATGTTTACTGCTTCGGCAAGGTCTTGCTTGAGCTGGTGACAGGCAAGCTT GGAGTCAGCAGCAATTCTGAAAACGCCGCAATGCGTGATTGGTTGGATCGTACACTTGGATACGTCAGTATCTACGACAAGGATATGGTGACCAAGATTG TAGACCCGTTACTGATCGTTGATGAAGACTTGTTAGAAGAGGTATGGGCAATGGCGATTGTGGCAAGGTCATGTCTTAATCCGAAGCCTTCCAAACGTCC TCCTATGAAATATATCCTCAAAGCACTGGAAAGCCCATTGAAGGTAGTGAGAGAGGAAAACTACAACAGCTCGGGGAGGCTTAGAACAACTTCATCCCGG AGATCTTGGAGTACTGCCTTCTTCGGCAGCTGGAGACATGGATCTTGGGACAATGCCAGCATTTTGAATCATGCTACCATGATCAGAGATGGCATCACCA CCTCGAAGCAGCCAATAGAATCTTATGGGAGCGGTCGAATTGAGTTCATAACATCTAATAAAAGACCATCTAACGAAATCTTTCCTGAGCCACCTGACAT GCAAGATATACAAAGGGATGAACCAGATATCTATCGAACTGGACACTAG
AA sequence Show only first row Show all	>Lus10010823 pacid=23170741 polypeptide=Lus10010823 locus=Lus10010823.g ID=Lus10010823.BGIv1.0 annot-version=v1.0 MEYLRLRVALLIWALIHCTATQQSSVLLSSRREWTALIHLRGSLGVRSVDWSIKADPCTSWKGVDCNGDGRVIGINISGFRRTRIGSSDPGFTVDSLANL TSLEVFNASRFPLPGSIPDWLGPRLGSSLRVLDLRSSSVTGSIPNSLGELSHLNALYLSDNELVGSLPDELGKLTQISVVDLSRNLLTGSIPDGFASLTN LSRLNLSSNYISGSIPLGFENASWLQLLDLSDNSLTGFIPDGLGSLSQLIELNLGKNSLSGCLSSGLVSRFERLQVVNLSGNKFEGTLPSTFRSLPDLQF LDLSSNNFTGDVQTTFPLNGINDSTSTAMFNLSNNLLYGTLPSSPFHNSTLVDLSGNYIQGKVPTGTKNVILNSNCLQAISSQRSLVDCRSFYDERRLSF DDFGGPAPSLLSSPKASKRWIYILVGVVVGIGFIALIALVMVLCIRKFDKKGSSPRGSANVGPVPETDIHPSTAHILSDLGESFTYDQLQRLAGNKNLIK NGHSGDLFQAFLGEGGAPIVVKRVDVKKESLYMMELEFLSKYSHARLVPLLGQCLENENEKFLVYKYMPNRDLASSLHRVVVSNSEEDGLQSLDWITRLK IAIGAAEALCFLHHECNPPVVHRDVQASSILLDDKFEVRLGSLSEIRVQEGESHHSKIITRFLRKQLSSESGSSGALMATCAYDVYCFGKVLLELVTGKL GVSSNSENAAMRDWLDRTLGYVSIYDKDMVTKIVDPLLIVDEDLLEEVWAMAIVARSCLNPKPSKRPPMKYILKALESPLKVVREENYNSSGRLRTTSSR RSWSTAFFGSWRHGSWDNASILNHATMIRDGITTSKQPIESYGSGRIEFITSNKRPSNEIFPEPPDMQDIQRDEPDIYRTGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	0	1
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	6.8	0.8270
AT1G48870			Transducin/WD40 repeat-like su...		Lus10020846 [exp]	7.9	0.7996
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	10.7	0.8092
AT4G18390	TCP	TCP2	TEOSINTE BRANCHED 1, cycloidea...		Lus10023297 [exp]	12.6	0.7532
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	13.3	0.6817
AT1G13230			Leucine-rich repeat (LRR) fami...		Lus10034384 [exp]	15.4	0.7535
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	17.0	0.7490
AT3G48200			unknown protein		Lus10032047 [exp]	34.9	0.7287
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10011092 [exp]	38.9	0.7411
AT3G50390			Transducin/WD40 repeat-like su...		Lus10011699 [exp]	39.3	0.7331

Compare expression of checked genes

Lus10010823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.