Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75230 358 / 4e-122 DNA glycosylase superfamily protein (.1.2) AT1G19480 355 / 4e-121 DNA glycosylase superfamily protein (.1.2) AT3G50880 254 / 3e-83 DNA glycosylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033215 [exp] 502 / 2e-178 AT1G75230 416 / 3e-144 DNA glycosylase superfamily protein (.1.2) Lus10041749 [exp] 253 / 6e-82 AT3G50880 308 / 3e-105 DNA glycosylase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035300 [exp] 402 / 1e-139 AT1G19480 360 / 8e-123 DNA glycosylase superfamily protein (.1.2) Potri.005G227700 [exp] 396 / 7e-137 AT1G75230 385 / 3e-132 DNA glycosylase superfamily protein (.1.2) Potri.007G024200 [exp] 259 / 4e-85 AT3G50880 293 / 1e-99 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10010824 pacid=23170752 polypeptide=Lus10010824 locus=Lus10010824.g ID=Lus10010824.BGIv1.0 annot-version=v1.0 ATGGGCGAACAAACCCAATCCCATCCACCGGACTCTCAATCTCAATCCCAAAATCAGCCTCAACTGGATTCTGCCTCTTCCCCTGCTCCCGATTCTGCTA CCACCCATACCTTCTCTTCTGTCGACACGGTGACTCTTCTACCTACTGACTTGACCCCCGCCCCTCCTCTTCAGACCACCGCCTCCCCTCCTGCCAAAAT CCCCTCTCGTCCCCGAAAAATCCGCAAGCTCTCTCCGGACGCCGCTCCCCATGAGGCTACCGACACCACCGCGGCCGAAACACCTAAGACCGCCGTACCC GTAGCCACCGCCGCCGCCACAAAGTCAGCAAAATCCAAAGCATCGTCGCAGCAGCGGGCCCTGGCTCCGAGGATAATCGCGAGGTCGTTGTCGTGTGAGG GGGAGGTGGAGACCGCAATCCGCCATCTCCGGGAATCGGATCCGATCTTGAGCTCCTTAATCGACCTCCATCCACCCCCGACCTTCGAAACATTCCAGAC GCCGTTCCTAGCCCTAACCCGTAGCATTCTCTATCAGCAGCTTGCGTTCAAGGCCGGGACCTCGATCTACACAAGGTTCATTTCTCTCTGCGGCGGCGAG GCTGGGGTGTTGCCGAAGACAGTTCTGGGCCTAACCCCGCAGCAGCTCCGTCAAATTGGGGTCTCTGGGAGGAAAGCAAGCTACCTTCACGATCTCGCAA GGAAATATGAGAAGGGGATATTGTCTGATTCAGCGATCGTGAGCATGGACGACAAATCATTGTTCACAATGCTTACAATGGTGAATGGGATTGGTTCGTG GTCTGTGCATATGTTCATGATCTTTTCGCTTCACAGGCCGGATGTGCTCCCGAGTAATGATGTTGGGGTGAGGAAAGGAGTTCAGCTTCTCTACAACTTG GATGACTTACCTCGTCCGTCACAGATGGAACAGCTGTGCGAGAAATGGAGGCCCTATAGGTCTGTGGCTTCATGGTATCTCTGGAGATTTGTGGATGCAA AAGGAAATCCTTCCAGTGCGCCTGCTGTGCCAACTGGTGTTGGCTTGGAGCAGACTCAAGAGGAGAGCCATAATCAGAATCAGCATCAGCAGACGCAGCA GCAGCCTCAGCTTATTGACCCCATTAGCGTTTACAACCTAGGGTAA
AA sequence Show only first row Show all	>Lus10010824 pacid=23170752 polypeptide=Lus10010824 locus=Lus10010824.g ID=Lus10010824.BGIv1.0 annot-version=v1.0 MGEQTQSHPPDSQSQSQNQPQLDSASSPAPDSATTHTFSSVDTVTLLPTDLTPAPPLQTTASPPAKIPSRPRKIRKLSPDAAPHEATDTTAAETPKTAVP VATAAATKSAKSKASSQQRALAPRIIARSLSCEGEVETAIRHLRESDPILSSLIDLHPPPTFETFQTPFLALTRSILYQQLAFKAGTSIYTRFISLCGGE AGVLPKTVLGLTPQQLRQIGVSGRKASYLHDLARKYEKGILSDSAIVSMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPSNDVGVRKGVQLLYNL DDLPRPSQMEQLCEKWRPYRSVASWYLWRFVDAKGNPSSAPAVPTGVGLEQTQEESHNQNQHQQTQQQPQLIDPISVYNLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	0	1
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	1.4	0.9555
AT1G53900			Eukaryotic translation initiat...		Lus10003938 [exp]	3.0	0.9161
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	3.2	0.9298
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10040418 [exp]	4.2	0.9284
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	4.9	0.9166
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	5.9	0.9216
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	6.3	0.9280
AT1G61150			LisH and RanBPM domains contai...		Lus10011219 [exp]	6.7	0.9076
AT4G35630		PSAT	phosphoserine aminotransferase...		Lus10005333 [exp]	9.2	0.9168
AT3G59390			unknown protein		Lus10004383 [exp]	10.2	0.8983

Compare expression of checked genes

Lus10010824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.