Plant FIBer expression Database

Lus10010825 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033214
[exp]
206 / 2e-65 AT3G22142 51 / 4e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10010825 pacid=23170761 polypeptide=Lus10010825 locus=Lus10010825.g ID=Lus10010825.BGIv1.0 annot-version=v1.0
ATGACAATGACAGAAACGACATGTCATCTGCTCCTTCTATCCCTCCCGTTACTTTTCCTGATATTGTTCAACGCCGCCGCACCCGTTGCCGGCGACGGGT
TCCTGGATCAAATCAATTCACAGTCTGTGTCGGAGCTGCTTTCAAGCGGCTCTCTCGATGATGCCAAGAAGGCCATGTCCCCCGATGTTCAGGGCGCCGT
CCAACAATTGGCGGCTTCTGTCAACGCTAAATCCGACGATGCTGAAGAGGCACTTAACTCGTTGGCTGAGTCCCCTGCCGAGGGCCCAGGCCCCGCTGCT
GGTTCCCCGGCGTCATCGGAAGAGGACTCGTCCTCTTGGAAGGATTGGCTTAAGGAAAAAATGCAGGGCATCGGCTACGGTGGGTCGCCATCAGACTCGC
CGGAAGTAGCGCCAGGACCAGCATGGGGACCGACATCATCAGAGGAATTTGCACCGGAGTCATCGATGGAAGAAGCTCCGGCGCCAGCCCCGGTGGGAAC
AGATACGGAGGCAGAAGGCCCGACAGCAGAAGGCCCGACAGCAGAAGGCCCGACACCAGAAGGCCCGACAGCAGCAGGCCCGACCGAACAGCAGAAGGCC
CAACAGCAGCTGCTCCGGCGCCGGCATAAGTACACGAGGATCAAATGTTATTGGGTGGGGAAGAGGCGGTGGTTGAGCTTGGCCGGAGAAGAGGCGGCAC
AACACTTCGACTTGCTGCAGGTGAGCTATGTCGATGACGCTGATGACGTGGTGGCAGAATTATCGATCTCTCAGCTGTCTTCTTCACCCCGTCAATCTCC
CAAAGAACCCCCCAACTTCAAATGGAACTCTAAGAATCAAGCTCGCAACAACTTCATTGCTTCGGCGATGAGACGAGCACAATAA
AA sequence
>Lus10010825 pacid=23170761 polypeptide=Lus10010825 locus=Lus10010825.g ID=Lus10010825.BGIv1.0 annot-version=v1.0
MTMTETTCHLLLLSLPLLFLILFNAAAPVAGDGFLDQINSQSVSELLSSGSLDDAKKAMSPDVQGAVQQLAASVNAKSDDAEEALNSLAESPAEGPGPAA
GSPASSEEDSSSWKDWLKEKMQGIGYGGSPSDSPEVAPGPAWGPTSSEEFAPESSMEEAPAPAPVGTDTEAEGPTAEGPTAEGPTPEGPTAAGPTEQQKA
QQQLLRRRHKYTRIKCYWVGKRRWLSLAGEEAAQHFDLLQVSYVDDADDVVAELSISQLSSSPRQSPKEPPNFKWNSKNQARNNFIASAMRRAQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010825
[exp]
0 1
AT3G06240 F-box family protein (.1) Lus10018106
[exp]
2.4 0.8676
AT2G25810 TIP4;1 tonoplast intrinsic protein 4;... Lus10037895
[exp]
19.5 0.8528
AT2G20080 unknown protein Lus10012982
[exp]
27.6 0.8427
AT5G06300 LOG7 LONELY GUY 7, Putative lysine ... Lus10012436
[exp]
29.9 0.8206
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10030616
[exp]
30.7 0.8223
AT5G51780 bHLH bHLH036 basic helix-loop-helix (bHLH) ... Lus10027394
[exp]
40.1 0.8050
AT5G51780 bHLH bHLH036 basic helix-loop-helix (bHLH) ... Lus10031676
[exp]
44.2 0.8089
Lus10043467
[exp]
45.1 0.7714
AT5G23750 Remorin family protein (.1.2) Lus10008477
[exp]
53.0 0.7989
AT5G66170 STR18 sulfurtransferase 18 (.1.2.3) Lus10028441
[exp]
54.4 0.7818

Lus10010825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.