Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010828 pacid=23170776 polypeptide=Lus10010828 locus=Lus10010828.g ID=Lus10010828.BGIv1.0 annot-version=v1.0 ATGTCTTTCTTATACCTCTCAACTTCTAAACCATATTCTCAATCTCCCTCTATCTGCCGTTTTTGCCTCTCGTTTTCATCATCTTCCTTCTGGCCGTTTA GGATTCTCCACTTCACCGCTGTTATCTGCAGCGGTGAAACTATTGTGGTGGGTTGTGAGTATGCAATTTTCGGTGGAGAAAAGGTGATCTCCGACAACAG GAATATCGATGAAGTCGTGACTCTCGTCATTGCACATTGTGGGAGGACATATTTTGTGGGCGGCGTCCCGGAATACAGGGGAGGTTCTACATGCACGCTC CATCTGCTGAAGGAAGATATCTCACTTTTCTGA
AA sequence Show only first row Show all	>Lus10010828 pacid=23170776 polypeptide=Lus10010828 locus=Lus10010828.g ID=Lus10010828.BGIv1.0 annot-version=v1.0 MSFLYLSTSKPYSQSPSICRFCLSFSSSSFWPFRILHFTAVICSGETIVVGCEYAIFGGEKVISDNRNIDEVVTLVIAHCGRTYFVGGVPEYRGGSTCTL HLLKEDISLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10010828 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	6.3	0.9125
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	7.7	0.8801
AT5G38420			Ribulose bisphosphate carboxyl...		Lus10005093 [exp]	8.7	0.8519
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10033212 [exp]	9.6	0.9111
AT2G24600			Ankyrin repeat family protein ...		Lus10024845 [exp]	10.6	0.8926
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020330 [exp]	10.8	0.9078
					Lus10009699 [exp]	11.0	0.9001
					Lus10008289 [exp]	15.3	0.8994
AT3G28540			P-loop containing nucleoside t...		Lus10007270 [exp]	16.4	0.8983
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006303 [exp]	20.7	0.8762

Compare expression of checked genes

Lus10010828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.