Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75260 113 / 7e-27 oxidoreductases, acting on NADH or NADPH (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033210 [exp] 696 / 0 AT1G75260 165 / 2e-45 oxidoreductases, acting on NADH or NADPH (.1) Lus10001963 [exp] 176 / 1e-49 AT1G75260 115 / 2e-27 oxidoreductases, acting on NADH or NADPH (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G034700 [exp] 211 / 3e-62 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1) Potri.005G228400 [exp] 166 / 2e-45 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010832 pacid=23170772 polypeptide=Lus10010832 locus=Lus10010832.g ID=Lus10010832.BGIv1.0 annot-version=v1.0 ATGGCAGAGCAGAGACAATTCCGATTCCGCCTTCCTTGGCTATCCTCCGCAACAACTCCTCCCCGTCCAACACCTGAAACTGAACCTACCCTTCCTCCAA CTACTGAAATTCGAGCCCCTCCCCAACCCACCTCCACCATTTCCTCCCAACGTCCACCCTTCAGGCCTGCCGGAATAGCTCCTCCTCCTCCACCTCCTCC ACCACAAGCTCCTGCTTCTCCCATCAGGACAAGAAGAACTACCTCCGTCGCACCATCGCCTACCCGGACTGTGTCTCGCTCTCTGCTTTCAGAAGGAGCT CCAATAGCCCGATCAGCATCTCCGACACTGCCTTCTCCTGAACTAAAGCTTACGGAGGACATTCCTACCTTAACAGCAGAGCATCAACGTTTAGGAAGCG GAGAGTACAAGCCCGAAATTTCCAAAGCAGCCACCACAGAAGAAATGGATGAACCAGAAGCAGAAACTAAACGAGATGAAAACAAAAACAGGGAAGGAAA TACGAACCTCTCTGGTTCTCAAAGTACCCTGAGAAACAGAGTCGCTGAACTTCTTTCATCTGCAACGCAAACCAGAGAGTCTGTGAGCACGGCCTCTCTA TTCGACGCTGACAGGAAGAAGTCTCCGACGAGCACTGGATCAGTTGATGAGAAGATCAAAGGAGTTAGTTCTACTAGCCATACAAGGACCAAGAAGGCTG CAAGCTCCGGCAATGGAGGAGAACAAGTTCCATTTCACAGAGAGATCAAGGAAGAGGTCTCTAAGTTGGTTGAAAAGCTCGGTCAGGGACACACCAAGCA GCCGAATGGTGACCAGCCCGTTAGCGTGGTCACTCTGGCCGGTGAAAACAGGGGAGCAACGATGCATTTCGAGGGTGAGCCAGAGAGGAAGGACGGATCC TTGCACATTCATCGAGGATACAAGACAAATCCGGATGACAGCATTGAAGAAGGAATCAAGAAGGGAAAGAGATCAAAACACACGACAACAAATAACGATG ATCAGCAGGCAACAATGGTTTACGTTAACAGCAACAGTCAGAGTATCAACAACTCAATCTTGCTTGACAGTAAGGTGAATGAAAGAAATCCAGGAGTTCA CTTGTTTCTGCCTCATAATATTCACCCAGACTCCAATGGATCAGCAGATAATGAAGAGCATAATACACACAGATCAGAGGTAAGTGTCACCCCAGCTGAG AAGCTTACTTATGAGCCTCGACTGAGGAGGAGATGCTTAAGAGGACTGTTACTGGAAACAAGTGATTCAGATCCTGACAATCCTGATAAACCTCGAAGAC ATGGTTGCCGCTACTATGCTTGCGGGAAAACCAGCAAAGACAAAGACACTGGGGTTCTTTAG
AA sequence Show only first row Show all	>Lus10010832 pacid=23170772 polypeptide=Lus10010832 locus=Lus10010832.g ID=Lus10010832.BGIv1.0 annot-version=v1.0 MAEQRQFRFRLPWLSSATTPPRPTPETEPTLPPTTEIRAPPQPTSTISSQRPPFRPAGIAPPPPPPPPQAPASPIRTRRTTSVAPSPTRTVSRSLLSEGA PIARSASPTLPSPELKLTEDIPTLTAEHQRLGSGEYKPEISKAATTEEMDEPEAETKRDENKNREGNTNLSGSQSTLRNRVAELLSSATQTRESVSTASL FDADRKKSPTSTGSVDEKIKGVSSTSHTRTKKAASSGNGGEQVPFHREIKEEVSKLVEKLGQGHTKQPNGDQPVSVVTLAGENRGATMHFEGEPERKDGS LHIHRGYKTNPDDSIEEGIKKGKRSKHTTTNNDDQQATMVYVNSNSQSINNSILLDSKVNERNPGVHLFLPHNIHPDSNGSADNEEHNTHRSEVSVTPAE KLTYEPRLRRRCLRGLLLETSDSDPDNPDKPRRHGCRYYACGKTSKDKDTGVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	1.0	0.9800
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	1.7	0.9705
					Lus10016944 [exp]	2.0	0.9723
AT1G63310			unknown protein		Lus10008287 [exp]	4.0	0.9632
AT2G27140			HSP20-like chaperones superfam...		Lus10003356 [exp]	4.5	0.9549
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	4.7	0.9373
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001844 [exp]	6.0	0.9546
AT5G41470			Nuclear transport factor 2 (NT...		Lus10032294 [exp]	6.0	0.9501
					Lus10014171 [exp]	7.5	0.9310
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	8.0	0.9529

Compare expression of checked genes

Lus10010832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.