Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47270 439 / 2e-153 TUB AtTLP6 tubby like protein 6 (.1.2) AT2G18280 418 / 3e-145 TUB AtTLP2 tubby like protein 2 (.1.2) AT2G47900 381 / 2e-130 TUB AtTLP3 tubby like protein 3 (.1.2.3) AT1G76900 370 / 1e-125 TUB AtTLP1 tubby like protein 1 (.1.2) AT1G25280 367 / 2e-124 TUB AtTLP10 tubby like protein 10 (.1.2.3) AT3G06380 356 / 4e-121 TUB ATTLP9 tubby-like protein 9 (.1) AT1G43640 352 / 1e-118 TUB AtTLP5 tubby like protein 5 (.1) AT5G18680 337 / 3e-113 TUB AtTLP11 tubby like protein 11 (.1) AT1G53320 305 / 4e-101 TUB AtTLP7 tubby like protein 7 (.1) AT1G16070 65 / 2e-11 TUB AtTLP8 tubby like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033209 [exp] 712 / 0 AT1G47270 471 / 1e-165 tubby like protein 6 (.1.2) Lus10033208 [exp] 710 / 0 AT1G47270 476 / 1e-167 tubby like protein 6 (.1.2) Lus10010645 [exp] 704 / 0 AT1G47270 471 / 6e-166 tubby like protein 6 (.1.2) Lus10014299 [exp] 443 / 2e-154 AT2G18280 492 / 5e-174 tubby like protein 2 (.1.2) Lus10041757 [exp] 437 / 2e-152 AT2G18280 478 / 9e-169 tubby like protein 2 (.1.2) Lus10028309 [exp] 435 / 2e-151 AT2G18280 481 / 1e-169 tubby like protein 2 (.1.2) Lus10026007 [exp] 430 / 2e-149 AT2G18280 471 / 6e-166 tubby like protein 2 (.1.2) Lus10033977 [exp] 375 / 3e-128 AT2G47900 548 / 0.0 tubby like protein 3 (.1.2.3) Lus10018884 [exp] 375 / 1e-127 AT1G76900 596 / 0.0 tubby like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G228500 [exp] 526 / 0 AT1G47270 472 / 7e-166 tubby like protein 6 (.1.2) Potri.002G034600 [exp] 513 / 0 AT1G47270 490 / 4e-173 tubby like protein 6 (.1.2) Potri.005G121600 [exp] 447 / 1e-156 AT2G18280 504 / 4e-179 tubby like protein 2 (.1.2) Potri.007G023400 [exp] 444 / 3e-155 AT2G18280 519 / 0.0 tubby like protein 2 (.1.2) Potri.005G192400 [exp] 384 / 1e-131 AT1G76900 607 / 0.0 tubby like protein 1 (.1.2) Potri.005G192300 [exp] 382 / 1e-130 AT1G76900 609 / 0.0 tubby like protein 1 (.1.2) Potri.002G068200 [exp] 379 / 2e-129 AT1G76900 603 / 0.0 tubby like protein 1 (.1.2) Potri.008G195200 [exp] 377 / 4e-129 AT2G47900 544 / 0.0 tubby like protein 3 (.1.2.3) Potri.010G031000 [exp] 374 / 4e-128 AT2G47900 531 / 0.0 tubby like protein 3 (.1.2.3) Potri.001G390200 [exp] 309 / 8e-103 AT1G53320 516 / 0.0 tubby like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF01167 [flax] [poplar] Tub Tub family CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10010833 pacid=23170737 polypeptide=Lus10010833 locus=Lus10010833.g ID=Lus10010833.BGIv1.0 annot-version=v1.0 ATGGGGCTTTCATTTAAGAGCATTGTGAGGGAGATGAGGGACAGCGTGGGGAGTATATCTAGGAGGAGAGTCAAGCGCCGGGGCAGAGCCCACATCGCAC CGGAAGGTGGGTCGTATGTACCCAGCCAATGGGGTAACGGCGGCGATCAGGGTCCGTGGGCTAATTTGCCGGCTGAGCTTTTAAGGGATATTATCCAGCG GATTGAATCGCGGGAGACCTCGTGGCCATCTAGGCGTGACGTGGTGGTTTGTGCTGCCGTCTGCCGATCGTGGCGGGGGATCACGAAGGAGATCGTCAAG ACCCCAGAGCAATGCAGCTGCTTCACTTTCCCTATCTCGCTAAAGCAGCCTGGACCGAGAGATGCTCCTATTCAGTGCTTTATCAAGAGGGAAAGAGCAA CTTCAACGTTTCAGTTGTACCTTGGTTTGAGCCCTGCTCTGTCTGGTTGTGCGAGCAAATTATTGTTGACTGCTAAGAAGGTTAGAAAGGCAACAAGTAC TGAGTTTAGGATATCCTTTGTTGGCTCTGATTTTTCTCAAGCCAGTAACACTTTTGTTGGAAAAATGAGGTCTAATTTCCTGGGTACCAAATTCACAATT CTTGACAGTCAACCCTCCAATCCTGCCGACATGCAGTCTGGTCGAAAAGTTAATTCAGTTCAGGTATCATCATACCCTCCTGCTAGAGGGTTCAGCCTCG CCAACTTAGTTTACGAGCTCAATATCTTGCACACGAGAGGTCCAAGAAGGATGCGATGCACAGTGCACTCTATTCCAATTTCATCAGTCCAGGAGGGAGG ATCTGCTCCTACTCCGATGGAATTGATGAATTACTGCAATGAAAAACTGCCTTCATCGCCCAGTTCAAAGGGAAACAAGTCTGTCAATGACATCAACGAT CTACAGGGTAAGGAGGCACTGTGCAGGGATCCCCTGGTTTTGAAAAACAAAGCTCCTAGATGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCAAGG GGCGTGTGACTGTAGCTTCAGTGAAAAACTTCCAGCTAGTTGCAGCTGCAGAACCTTCATACATTGTTTCGCCCGAGGAGCAGGAGAAAGTGATTCTGCA ATTTGGAAAGATTGGTAAAGACATCTTCACTATGGACTATCGCTATCCAATTTCTGCCTTCCAAGCTTTTGCAGTCTGCCTTAGTAGTTTTGACACAAAG CCAGCTTGTGAATGA
AA sequence Show only first row Show all	>Lus10010833 pacid=23170737 polypeptide=Lus10010833 locus=Lus10010833.g ID=Lus10010833.BGIv1.0 annot-version=v1.0 MGLSFKSIVREMRDSVGSISRRRVKRRGRAHIAPEGGSYVPSQWGNGGDQGPWANLPAELLRDIIQRIESRETSWPSRRDVVVCAAVCRSWRGITKEIVK TPEQCSCFTFPISLKQPGPRDAPIQCFIKRERATSTFQLYLGLSPALSGCASKLLLTAKKVRKATSTEFRISFVGSDFSQASNTFVGKMRSNFLGTKFTI LDSQPSNPADMQSGRKVNSVQVSSYPPARGFSLANLVYELNILHTRGPRRMRCTVHSIPISSVQEGGSAPTPMELMNYCNEKLPSSPSSKGNKSVNDIND LQGKEALCRDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSYIVSPEEQEKVILQFGKIGKDIFTMDYRYPISAFQAFAVCLSSFDTK PACE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47270	TUB	AtTLP6	tubby like protein 6 (.1.2)		Lus10010833 [exp]	0	1
					Lus10010597 [exp]	3.2	0.8058
AT3G05165			Major facilitator superfamily ...		Lus10018956 [exp]	5.0	0.7570
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	8.1	0.7908
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	9.5	0.7864
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	11.0	0.7800
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	14.2	0.7119
AT5G16940			carbon-sulfur lyases (.1.2)		Lus10018517 [exp]	14.8	0.7335
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10003426 [exp]	14.8	0.7448
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	16.3	0.7536
AT1G80910			Protein of unknown function (D...		Lus10021811 [exp]	17.0	0.7350

Compare expression of checked genes

Lus10010833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.