Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02280 259 / 1e-90 SNARE-like superfamily protein (.1) AT1G51160 62 / 1e-12 SNARE-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024390 [exp] 291 / 2e-103 AT5G02280 263 / 4e-92 SNARE-like superfamily protein (.1) Lus10023793 [exp] 265 / 4e-93 AT5G02280 261 / 2e-91 SNARE-like superfamily protein (.1) Lus10039298 [exp] 69 / 4e-15 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2) Lus10027541 [exp] 69 / 4e-15 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G069800 [exp] 271 / 2e-95 AT5G02280 267 / 1e-93 SNARE-like superfamily protein (.1) Potri.017G149900 [exp] 65 / 7e-14 AT1G51160 332 / 2e-118 SNARE-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF04099 [flax] [poplar] Sybindin Sybindin-like family
Representative CDS sequence Show only first row Show all	>Lus10010836 pacid=23163413 polypeptide=Lus10010836 locus=Lus10010836.g ID=Lus10010836.BGIv1.0 annot-version=v1.0 ATGGCTGCTATTTACAGCCTCTACATCATTAACAAATCCGGCGGCTTGATCTTCTACAAGGATTATGGATCTTCTGGTAGAATGGACACGAACGACAGCT TGCGAGTGGCTAGTTTGTGGCACTCGATGCACGCCATTTCTCAGCAGTTATCCCCAATTGTTGGCTGTACGGGCATTGAGCTCCTTGAAGCCGATAATTT TGACCTCCATTGCTTCCAATCCCTTACAGGGACGAAGTTCTTTGTTGTGTCTGAGCCAGGAACGCTGTACATGGAGAATCTGTTGAAGTACATCTACGAG CAGTATACGGATTACGTGTTGAAAAACCCTTTCTATGAGATGGAGATGCCTATCAGATGTGAGCTCTTCGACATCAATATGTCTCAGGCTATACAGAAGG ATCTTGTTGCTCTGTTGGGTCGATGA
AA sequence Show only first row Show all	>Lus10010836 pacid=23163413 polypeptide=Lus10010836 locus=Lus10010836.g ID=Lus10010836.BGIv1.0 annot-version=v1.0 MAAIYSLYIINKSGGLIFYKDYGSSGRMDTNDSLRVASLWHSMHAISQQLSPIVGCTGIELLEADNFDLHCFQSLTGTKFFVVSEPGTLYMENLLKYIYE QYTDYVLKNPFYEMEMPIRCELFDINMSQAIQKDLVALLGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02280			SNARE-like superfamily protein...		Lus10010836 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	1.4	0.8312
AT5G19370			rhodanese-like domain-containi...		Lus10026105 [exp]	3.7	0.8226
AT4G00290			Mechanosensitive ion channel p...		Lus10018822 [exp]	6.0	0.8178
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	9.5	0.8218
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	12.7	0.8069
AT3G13226			regulatory protein RecX family...		Lus10032955 [exp]	13.5	0.7972
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034350 [exp]	14.1	0.7486
AT1G76405			unknown protein		Lus10025161 [exp]	15.2	0.8019
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	15.7	0.8060
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10021078 [exp]	17.0	0.8084

Compare expression of checked genes

Lus10010836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.