Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02270 488 / 8e-174 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) AT5G44110 278 / 6e-92 ABCI21, ATPOP1, ATNAP2, POP1 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATP-binding cassette A21, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G03905 273 / 8e-90 ABCI19 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G33460 50 / 1e-06 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT4G25450 48 / 8e-06 ABCB28, ATNAP8 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 8, ATP-binding cassette B28, non-intrinsic ABC protein 8 (.1.2.3) AT2G41700 48 / 1e-05 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT1G02530 47 / 3e-05 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G02520 45 / 6e-05 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT5G61730 45 / 0.0001 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT2G36910 44 / 0.0002 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023792 [exp] 507 / 0 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10003971 [exp] 507 / 1e-175 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10024914 [exp] 273 / 7e-90 AT1G03905 439 / 2e-156 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022909 [exp] 273 / 1e-89 AT1G03905 436 / 1e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029905 [exp] 62 / 3e-10 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 57 / 1e-08 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10032911 [exp] 56 / 5e-08 AT3G28860 960 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10017833 [exp] 52 / 2e-07 ND / Lus10015595 [exp] 49 / 9e-06 AT3G28860 971 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086000 [exp] 503 / 4e-180 AT5G02270 511 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.003G155800 [exp] 495 / 6e-177 AT5G02270 503 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Potri.005G226600 [exp] 279 / 4e-92 AT1G03905 435 / 3e-155 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G036300 [exp] 278 / 5e-92 AT1G03905 441 / 2e-157 ATP-binding cassette I19, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G062800 [exp] 60 / 7e-10 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.005G073100 [exp] 52 / 4e-07 AT1G17840 661 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.005G073050 [exp] 50 / 2e-06 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.009G007800 [exp] 48 / 9e-06 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.018G087100 [exp] 47 / 2e-05 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G063500 [exp] 47 / 2e-05 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010838 pacid=23163448 polypeptide=Lus10010838 locus=Lus10010838.g ID=Lus10010838.BGIv1.0 annot-version=v1.0 ATGACGATTACAGAGCAGCCACAACAACCGACGATCAAAATCAACGGCCTGAGCTTCACGTATCCAGGAACCGACGGCCATCCGCCGCCTGGTTCCAAAC CTCTCATCGACGATTTCTCACTCACCCTCAATTCCAGCGAACGCTGCCTTCTCGTCGGATCAAATGGCGCCGGGAAAACCACGATACTGAAAATACTGGG AGGTAAGCATATGGTGGAGCCTCACATGGTTCGAGTATTAGGAAAGTCAGCTTTTCACGACACTTCGTTGACCACTTCCGGTGATCTTTCCTATCTTGGA GGGGAGTGGCGAAGGGATGTTGCCTTTGCTGGATTCGACGTGCCTATACAAATGGACATCTCTGCAGAGAAAATGATATTTGGTGTGGCTGGCATTGAGC CCCAAAGAAGAGCTGAGCTCATAAAAGTACTGGATGTTGATCTGTCATGGAGATTGCACAAGGTTTCTGATGGTCAAAGAAGAAGAGTACAGATATGTAT GGGCCTCCTGAGACCATACAAGGTTCTTCTACTTGATGAGATAACAGTTGACCTCGATGTGCTAGCCCGGGCCGATCTTCTAAAATTCCTAAGGAAGGAA TGTGAAGAACGAGGTGCAACTATCATCTACGCTACTCACATATTTGATGGTTTGGAGGAATGGCCAACGCATATTGTGTATGTGGCTCATGGGAAGTTGC AACTAGCAATGCCGATGGCAAAGGTCAAGCAGATTAGTAACCTGTCACTGATGAGGACAGTTGAAACGTGGTTGAGGAAAGAAAGGGAAGAGGAGAGGAA GAGGAGGAAAGAGAGGAAAGCAAATGGTCTTCCGGAGTTTGGCGATCCGGTTCGTGCAGCAGCCATTCGAGTAACGAACAATGGCTGGGCAGCTGGAAGG CTACATTCGACTGTTGCCGGGCAAGGGAATATCGAGTTGAGTTCAAACAGATTCTCTGAGGAAGATCGGGAGGAAAATATGGAAAGTGAAGACTCGATGG AAGGCAAAGATGAATCAACTGATGAGTTGGTAGAAGCCTTTGCTAGTTTGGAGGTCAGTGACGAGTCATGGAATACTAGGATGGCTCGTTTAGGAGGCTG GATCGATCTAGCCACTGAGGTGGCAAGACAAGGCAAGAGTTTTTCAACAAATTTTAAGGGAACTTCATGA
AA sequence Show only first row Show all	>Lus10010838 pacid=23163448 polypeptide=Lus10010838 locus=Lus10010838.g ID=Lus10010838.BGIv1.0 annot-version=v1.0 MTITEQPQQPTIKINGLSFTYPGTDGHPPPGSKPLIDDFSLTLNSSERCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGKSAFHDTSLTTSGDLSYLG GEWRRDVAFAGFDVPIQMDISAEKMIFGVAGIEPQRRAELIKVLDVDLSWRLHKVSDGQRRRVQICMGLLRPYKVLLLDEITVDLDVLARADLLKFLRKE CEERGATIIYATHIFDGLEEWPTHIVYVAHGKLQLAMPMAKVKQISNLSLMRTVETWLRKEREEERKRRKERKANGLPEFGDPVRAAAIRVTNNGWAAGR LHSTVAGQGNIELSSNRFSEEDREENMESEDSMEGKDESTDELVEAFASLEVSDESWNTRMARLGGWIDLATEVARQGKSFSTNFKGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10010838 [exp]	0	1
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	3.2	0.9373
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	6.2	0.8989
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	7.1	0.9202
AT3G52220			unknown protein		Lus10039101 [exp]	8.0	0.9197
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001781 [exp]	9.5	0.9019
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	10.1	0.9225
AT3G49420			Got1/Sft2-like vescicle transp...		Lus10026704 [exp]	11.5	0.9058
AT5G58740			HSP20-like chaperones superfam...		Lus10018234 [exp]	11.6	0.9113
AT4G14600			Target SNARE coiled-coil domai...		Lus10020947 [exp]	13.3	0.8797
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10037914 [exp]	14.0	0.8871

Compare expression of checked genes

Lus10010838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.