Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024550 [exp] 162 / 5e-48 ND / Lus10032810 [exp] 156 / 6e-47 ND / Lus10002537 [exp] 163 / 5e-46 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10034588 [exp] 139 / 4e-40 ND / Lus10008053 [exp] 113 / 5e-30 ND / Lus10042521 [exp] 98 / 2e-25 ND / Lus10016838 [exp] 91 / 6e-22 AT2G24960 71 / 4e-14 unknown protein Lus10004997 [exp] 79 / 1e-17 ND / Lus10024976 [exp] 77 / 8e-16 AT1G40087 91 / 5e-20 Plant transposase (Ptta/En/Spm family) (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03004 [flax] [poplar] Transposase_24 Plant transposase (Ptta/En/Spm family)
Representative CDS sequence Show only first row Show all	>Lus10010839 pacid=23163417 polypeptide=Lus10010839 locus=Lus10010839.g ID=Lus10010839.BGIv1.0 annot-version=v1.0 ATGAGTGATGACATTCGATTTTTCGTGTTCATCATCCTCGTCCTCAATTTTTATTTCTATCCATGTGAGAAGAAACGAGGTATCGTGTATGTCATCAAAA AAGCTGGAGAAGTATGGGTGAGGAACCAGCGGTTCAAGTTTGATGAATACTACAGTTCTTCCCGGAGTTTGGATGACAATCTCAGGAATGTGCCGCCGGG CGTCGCTGAAGCACAGTGGGGTGCATATTTGAAGATACGCACAGATGAAGAGAAGAAGAAAAAAGTGAAGCTAAACAAGGAAAATAAACAGATGCAAAAG AGGAACCACGCAGGTGGGTCGAGGCCTTACTCTCGTTACCATGAGGAGATCTTTCAACAGACTGGTATAGTACCTTATAGAGGAGAGGTTTGGAGGCGAG CTAATCAAAAGGTGGATGGAAGTTGGGAAAATCCACCTGCTGAGGCAATAGCGGAGCGCATCCTCCACTATGATCGACAAGGGATTCCTCGACGAGAAGG GTATGGTGATTCTCTAGATTTGGCACTTCGAAATCTAGATCCAGAATACAAAGGAGAGCACTTTGGGAGAGTGATGACTAAGAGCAAATCTGTTACCCCA TCACAGATTATGTGTTTCGTTCAACTAAATTTCACAACCTCAATTAGTAGAGTTTCTGACGCCACTTCTTCAGTTGCACACATGGTTGATGGTTGTCCTG AATATGAAGACACGCTTCGCCACATGCAAGAAGAGTGGATGCATAGGGATGCTGCAAGAGAGGCTGAGTATCGTAGGAGGGAGGCTGAATGGGCACAACG AGTTGCTCAACAACCATATCCCATGTTAGGCGTTGATGATGAATCTAAAAAAGAGGAGATCCAAGAAGAGGAGGTTCAATCAGATTAA
AA sequence Show only first row Show all	>Lus10010839 pacid=23163417 polypeptide=Lus10010839 locus=Lus10010839.g ID=Lus10010839.BGIv1.0 annot-version=v1.0 MSDDIRFFVFIILVLNFYFYPCEKKRGIVYVIKKAGEVWVRNQRFKFDEYYSSSRSLDDNLRNVPPGVAEAQWGAYLKIRTDEEKKKKVKLNKENKQMQK RNHAGGSRPYSRYHEEIFQQTGIVPYRGEVWRRANQKVDGSWENPPAEAIAERILHYDRQGIPRREGYGDSLDLALRNLDPEYKGEHFGRVMTKSKSVTP SQIMCFVQLNFTTSISRVSDATSSVAHMVDGCPEYEDTLRHMQEEWMHRDAAREAEYRRREAEWAQRVAQQPYPMLGVDDESKKEEIQEEEVQSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30200			Plant transposase (Ptta/En/Spm...		Lus10010839 [exp]	0	1

Compare expression of checked genes

Lus10010839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.