Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39700 371 / 3e-126 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 370 / 1e-125 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G28950 363 / 4e-123 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT3G55500 363 / 4e-123 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 357 / 1e-120 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G03090 296 / 4e-97 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 293 / 6e-96 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G05290 291 / 3e-95 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT5G56320 291 / 3e-95 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 283 / 6e-92 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024388 [exp] 438 / 1e-152 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10016533 [exp] 379 / 2e-129 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 379 / 3e-129 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10040286 [exp] 372 / 2e-126 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 367 / 2e-124 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10034227 [exp] 298 / 8e-98 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10036763 [exp] 291 / 5e-95 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10042214 [exp] 288 / 6e-94 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10037164 [exp] 288 / 8e-94 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G240900 [exp] 377 / 1e-128 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.008G057100 [exp] 376 / 3e-128 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.010G202500 [exp] 374 / 1e-127 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.006G086100 [exp] 374 / 2e-127 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.009G031800 [exp] 370 / 6e-126 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.016G135200 [exp] 308 / 5e-102 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 306 / 7e-101 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 304 / 3e-100 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.008G088300 [exp] 295 / 6e-97 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 293 / 3e-96 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10010841 pacid=23163461 polypeptide=Lus10010841 locus=Lus10010841.g ID=Lus10010841.BGIv1.0 annot-version=v1.0 ATGCCGTTTTATTTTTTATTTTTACTTGCCCTCCTCCCTTATCTCCTCCATAAATACTCCCTCAGCTCCTTTCCGCTCTGCCTCGCTCCACACTCACAGC AGTCACACACATTATCCCTCTCTGCTCTCTCCCTCCCTCCACTCCAGCCATGGCTCGTCCCACCCTCATCTGCTCTGTCTCGTACAATCCTCTTCCCCCT TGCGTCTCTTCTAGTCCTCTCTCTCCTCGCGCCGGTCACCGCCAGAATCCCCGGAGTCTACACCGGCGGGCCTTGGGAGAGCGCTCACGCCACTTTCTAC GGCGGTGCCGACGCCTCCGGAACTATGGGGGTACGGAGTGAACACAGCGGCTCTGGGGACCCCGCACCTCAATGGAAGGGCTGGCGGTCCGAAGGGCTGA GCTGCGGCGCTTGCTTCGAGATCAAGTGCGACAGTGATCCCAGGTGGTGCCACCCTGGCCAGCCTTCCATTTTCGTCACCGCTACCAACTTCTGCCCTCC CAACTTCGCTCAGCCCAGCGACAATGGAGGATGGTGCAACCCGCCCCGCACTCACTTCGACCTCGCCATGCCTATGTTCCTCAAGATTGCTGAGTACCGC GCCGGAATCGTCCCCGTCTCATTCCGTCGGGTGCCGTGCAGGAAGGTAGGAGGGATCAGATTCTCAATCAACGGATTCCGTTACTTCAACCTGCTGCTGG TGACAAACGTGGCCGGAGCCGGCGACATCGTCAAGGTAAGCATCAAAGGAGAGCGCACAAACTGGATGCCGATGAGCCGAAACTGGGGGCAAAATTGGCA ATCCAACTCCGTCCTCGTCGGACAGCGGCTCTCCTTCAGGGTCACCGGCAGCGACAGGAGGACCGTCACCTCGATGAACATCGCTCCCGCCAACTGGCAG TTCGGCCAGACCTTCACCGGAAAGAACTTCCGCTACGTAGCTGCTGGTAATGGTGGTGGAGGTGGTGTTGTCGCCTGTGGATATTTCCCTTTCTATTATC TCGGGAAAATCCGGAGAGCGAGTCCGTTTGTGTTAGGAATTTTAGGGGTTTTATTTATTTATTACAGGAGCATTTCAATGGGAGCTGAAGCGGCTGCAGA ACGGGTTAGCCAATTTAACAGCGGTTCAAAATCGCCGTTAAAAACACGGGATATCAGACCAGCAGACCCTTTCTTCCTTCTCCTCTGCGCTTTCTTCTTC CTTCGCCATCTTCATCCGCCGACGTCGCCGCTCGCCGTCCAGCGTCTCGATCGCCGGTCATTGGTCTCCGGTGGTGGGTGCTCTGCCATCAAACTCACAC GTGGATCCCTAATCAAACAAGTGCTTGGAAAGATCATCAAACTGGAACGCTTCCCCATTGGCCACGGCGATTGGCAATATGTGAGCGACTTGGACAAGGC CGATTGTTGGCATCAACTCATAGAGGTTGGCCCGAATGATGCTGTAGGGAGATGCTATCAAGGAAAAGAGAAGCCAGGAAGAGTGCATCATATGGGATTT TCCAAGAAGTCTTCGGTGGTGTTTGGTTTGAGTTCAAGCAGCACACAAACTCCTTTTAGTCCCCGAGTTCAAGTCGAGGACCCGGTCATGCTACAGTTTG TGAAGCTTATGCTTGTGGAGTTTCAGAAGCAAACTGGTAATCTCTCCCCTGAGATGCAGGCAATGTCTCGAATCTTGGAAGGTTCTGTACCGGACTCATC TGGAGCTTTCTGA
AA sequence Show only first row Show all	>Lus10010841 pacid=23163461 polypeptide=Lus10010841 locus=Lus10010841.g ID=Lus10010841.BGIv1.0 annot-version=v1.0 MPFYFLFLLALLPYLLHKYSLSSFPLCLAPHSQQSHTLSLSALSLPPLQPWLVPPSSALSRTILFPLASLLVLSLLAPVTARIPGVYTGGPWESAHATFY GGADASGTMGVRSEHSGSGDPAPQWKGWRSEGLSCGACFEIKCDSDPRWCHPGQPSIFVTATNFCPPNFAQPSDNGGWCNPPRTHFDLAMPMFLKIAEYR AGIVPVSFRRVPCRKVGGIRFSINGFRYFNLLLVTNVAGAGDIVKVSIKGERTNWMPMSRNWGQNWQSNSVLVGQRLSFRVTGSDRRTVTSMNIAPANWQ FGQTFTGKNFRYVAAGNGGGGGVVACGYFPFYYLGKIRRASPFVLGILGVLFIYYRSISMGAEAAAERVSQFNSGSKSPLKTRDIRPADPFFLLLCAFFF LRHLHPPTSPLAVQRLDRRSLVSGGGCSAIKLTRGSLIKQVLGKIIKLERFPIGHGDWQYVSDLDKADCWHQLIEVGPNDAVGRCYQGKEKPGRVHHMGF SKKSSVVFGLSSSSTQTPFSPRVQVEDPVMLQFVKLMLVEFQKQTGNLSPEMQAMSRILEGSVPDSSGAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10010841 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011997 [exp]	2.4	0.9755
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10040590 [exp]	2.8	0.9551
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	4.6	0.9551
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10014356 [exp]	4.9	0.9474
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Lus10026008 [exp]	6.0	0.9584
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10008627 [exp]	6.2	0.9410
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	6.8	0.9600
AT3G54940			Papain family cysteine proteas...		Lus10038684 [exp]	8.7	0.9375
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	10.8	0.9545
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10002421 [exp]	15.6	0.9382

Compare expression of checked genes

Lus10010841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.