Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09300 734 / 0 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 731 / 0 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 731 / 0 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT4G12460 177 / 1e-48 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT4G08180 176 / 8e-48 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT4G22540 169 / 5e-47 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT2G31020 172 / 1e-46 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT2G31030 167 / 2e-46 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G13170 168 / 4e-45 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT5G57240 73 / 1e-13 ORP4C OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024386 [exp] 898 / 0 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10024613 [exp] 183 / 2e-50 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025635 [exp] 176 / 8e-48 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 174 / 3e-47 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025695 [exp] 169 / 2e-45 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 165 / 4e-44 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 164 / 1e-43 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10035967 [exp] 154 / 2e-40 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10032251 [exp] 145 / 2e-37 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086400 [exp] 801 / 0 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.003G111600 [exp] 177 / 3e-48 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 174 / 1e-47 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.019G015111 [exp] 172 / 1e-46 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.005G172900 [exp] 172 / 1e-46 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 171 / 4e-46 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 159 / 6e-42 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G076400 [exp] 78 / 2e-15 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Potri.018G143600 [exp] 76 / 7e-15 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.008G182766 [exp] 66 / 1e-11 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Lus10010843 pacid=23163446 polypeptide=Lus10010843 locus=Lus10010843.g ID=Lus10010843.BGIv1.0 annot-version=v1.0 ATGGCTGCTAATGATCCCAAGCCAAGTGGAGGCGGATTCTTCTCTTCGATCGCTTCCGGTCTGTCCAGCATCGGCAGCGCCGTGTCCAGATCAGTGAACG GATCAGTTCCTTACGAAGGGGTGGAAATAATCAACCCAGACGGAGGCACAGAAGATATCGAGGATGAAGCAATGAAAGGGAGATGGAAACAAGAGGAAAG AGACAGTTATTGGAAGATGATGCAGAAATATATTGGCTCTGATGTCACATCAATGGTTACGCTTCCAGTAATTATCTTTGAGCCAATGACAATGGTTCAG AAGATGGCAGAGCTGATGGAATACTCCCACCTGCTAGATCTTGCGGACGAATGTGATGATCCCCACATGCGGTTGGTGTATGCTGCATCATTTTTCATAT CGGTCTACTATGCCTTTCAACGCACATGGAAGCCATTTAACCCGATTCTGGGGGAGACTTATGAACTTACTAACCATGGGGGCATTTCATTCATAGCAGA ACAGGTTAGCCATCATCCTCCCATAAGTGTGGGGCATGCAGAAAATGAGCATTTCACTTATGACATAACTTCTAAGGTGAAGACTAAATTTCTGGGGAAC TCAATTGAGATCTATCCTCTTGGAAGGACACGTGTGACCCTCAAGAGAGATGGGGTAGTTCTTGATTTGGTGCCACCGCTAACAAAAGTTAGCAACTTAA TCTTCGGAAGAACTTGGATTGATTCACCAGGGGAGATGGTTCTGACTAACATGACTACTGGAGACAAAGTAGTGTTGTATTTTCAACCATGTGGTTGGTT CGGAGCTGGTCGCTATGAAGTAGATGGCTATGTGTATAACGCTGATGAGGAACCCAAGATATTGATGACTGGTAAATGGAACGAGTCCATGAGTTATCAA CCCTGTGACATGGAAGGAGAACCCCGTCCTGGTACAGAACTGCAGGAGGTGTGGAGAGTTGCCGATGCTCCCAAAAATGACAAGCATCAGTATACATACT TTGCGCACAAGATGAACAGCTTCGACACTGCTCCGAAGAAGTTATTGTCCTCAGATGCTCGGTTACGCCCTGATAGATACGCACTTGAGAAGGGGGATTT ATCAAAATCTGGTGCAGAGAAAAGCAGGCTGGAGGAGAGACAAAGGGCTGAGAAGAAACACCGGGAGGCCAAAGGAGAACAATTTACTCCGAAATGGTTC GACCCAACCAACGAAATTCACCCTACTCCATGGGGCGACCTGGAATTATACCAGTACAATGGCAAGTACAACGAACACCGTGCTGCAGTTGACAGCTCAG ACAGCGTCGAGGAAACTGACATACAATCTATCGAGTTCAACCCATGGCAGTACGATGATGTGGCGGCCGAATGA
AA sequence Show only first row Show all	>Lus10010843 pacid=23163446 polypeptide=Lus10010843 locus=Lus10010843.g ID=Lus10010843.BGIv1.0 annot-version=v1.0 MAANDPKPSGGGFFSSIASGLSSIGSAVSRSVNGSVPYEGVEIINPDGGTEDIEDEAMKGRWKQEERDSYWKMMQKYIGSDVTSMVTLPVIIFEPMTMVQ KMAELMEYSHLLDLADECDDPHMRLVYAASFFISVYYAFQRTWKPFNPILGETYELTNHGGISFIAEQVSHHPPISVGHAENEHFTYDITSKVKTKFLGN SIEIYPLGRTRVTLKRDGVVLDLVPPLTKVSNLIFGRTWIDSPGEMVLTNMTTGDKVVLYFQPCGWFGAGRYEVDGYVYNADEEPKILMTGKWNESMSYQ PCDMEGEPRPGTELQEVWRVADAPKNDKHQYTYFAHKMNSFDTAPKKLLSSDARLRPDRYALEKGDLSKSGAEKSRLEERQRAEKKHREAKGEQFTPKWF DPTNEIHPTPWGDLELYQYNGKYNEHRAAVDSSDSVEETDIQSIEFNPWQYDDVAAE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02100		UNE18, ORP3A	UNFERTILIZED EMBRYO SAC 18, OS...		Lus10010843 [exp]	0	1
AT3G50150			Plant protein of unknown funct...		Lus10010065 [exp]	1.0	0.9123
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	2.6	0.8919
AT1G22900			Disease resistance-responsive ...		Lus10025804 [exp]	3.5	0.8922
					Lus10033509 [exp]	4.5	0.9021
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	4.6	0.9015
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	7.5	0.8996
AT1G79910			Regulator of Vps4 activity in ...		Lus10011455 [exp]	8.1	0.8804
AT2G26690			Major facilitator superfamily ...		Lus10030081 [exp]	10.0	0.8161
AT5G25265			unknown protein		Lus10041028 [exp]	11.2	0.8660
AT2G02061			Nucleotide-diphospho-sugar tra...		Lus10031330 [exp]	12.2	0.8990

Compare expression of checked genes

Lus10010843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.