Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46590 295 / 1e-91 ATTRP2, TRFL1 TRF-like 1 (.1.2.3) AT1G07540 293 / 4e-90 MYB TRFL2 TRF-like 2 (.1) AT3G12560 281 / 1e-85 ATTBP2, TRFL9 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) AT5G13820 276 / 1e-83 HPPBF-1, ATTBP1, ATBP-1, ATBP1, TBP1 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) AT5G59430 265 / 3e-80 ATTRP1 TELOMERE REPEAT BINDING PROTEIN 1, telomeric repeat binding protein 1 (.1.2.3.4) AT3G53790 231 / 1e-69 MYB TRFL4 TRF-like 4 (.1) AT1G17460 63 / 5e-10 MYB TRFL3 TRF-like 3 (.1.2) AT1G72650 59 / 1e-08 MYB TRFL6 TRF-like 6 (.1.2) AT2G37025 54 / 3e-07 TRFL8 TRF-like 8 (.1.2) AT1G72740 44 / 0.0003 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024385 [exp] 1154 / 0 AT1G07540 310 / 7e-97 TRF-like 2 (.1) Lus10016527 [exp] 290 / 1e-88 AT3G46590 388 / 1e-127 TRF-like 1 (.1.2.3) Lus10002704 [exp] 288 / 1e-87 AT5G13820 471 / 4e-158 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10000947 [exp] 285 / 3e-86 AT5G13820 455 / 5e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10040795 [exp] 281 / 3e-85 AT1G07540 400 / 1e-132 TRF-like 2 (.1) Lus10040285 [exp] 274 / 2e-82 AT5G13820 456 / 1e-152 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10023406 [exp] 219 / 5e-62 AT5G13820 392 / 5e-128 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Lus10013809 [exp] 56 / 3e-09 AT2G37025 97 / 3e-24 TRF-like 8 (.1.2) Lus10020771 [exp] 58 / 2e-08 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086500 [exp] 516 / 1e-175 AT1G07540 370 / 2e-119 TRF-like 2 (.1) Potri.001G241600 [exp] 351 / 4e-111 AT1G07540 375 / 6e-121 TRF-like 2 (.1) Potri.009G032000 [exp] 344 / 7e-109 AT1G07540 485 / 7e-164 TRF-like 2 (.1) Potri.008G057300 [exp] 318 / 1e-98 AT5G13820 427 / 8e-141 H-PROTEIN PROMOTE, telomeric DNA binding protein 1 (.1) Potri.010G202400 [exp] 316 / 7e-98 AT3G12560 461 / 1e-154 TELOMERIC DNA-BINDING PROTEIN 2, TRF-like 9 (.1) Potri.003G063700 [exp] 62 / 1e-09 AT1G72650 333 / 7e-106 TRF-like 6 (.1.2) Potri.001G170200 [exp] 59 / 8e-09 AT1G72650 399 / 5e-131 TRF-like 6 (.1.2) Potri.006G126300 [exp] 54 / 4e-07 AT2G37025 120 / 2e-29 TRF-like 8 (.1.2) Potri.013G154500 [exp] 49 / 2e-05 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010844 pacid=23163422 polypeptide=Lus10010844 locus=Lus10010844.g ID=Lus10010844.BGIv1.0 annot-version=v1.0 ATGTTATTAACCCTTCTGGAGCTTGCAGATATTGAAGGATACTCTTCCATTTTTTACTGGGATCAGAAGGGCTCATCACCAATCCTGACTGCATATGGGT TGAAGAAACGCCTTCTCCAGGGCAGGGGAATAATGAGGAAGAAAGGAGAAAACAGTCATATACAAGCATTCGAAATCCTAGCTAGTGTTGCTGGCAAAAT ATTGCAGAGTGGTGAAAGTTCTACGAAACTGTCGCAGGGCGATGATGAAGGAGAATTATCGAACCCGGAAGCTTCTGTAGAGAAAATTACCTCTCCCTCA GAGCCTGGTTTGAACAGCTATCCACTCCATGAGTTCTTGCCAGCTCAGCAGACGTATAGTCACAAGGGAAGCTCAAGTTCCTATAATCTTGATCATGAAG CTGAGAACTTGGCCACCCGTGATGATGGTAAAATGACTAACCGAACCGTTTTGAATAAACTGGATGGATGGAAACTTTATCAAGGCCAAGATGAGAGCCT GACCGAGAGAAAACCTGAAGCTGCTGAAACTGAGTGCAAGGTCAAAAGTGCTGAGAGTGGGACTTTACCGGTGCAAGGCGATTTCGAGGACAAAATGGAA ATCGACATGAACATTCCAGCATGTGCAAGCCCTGACGAGAACAGCGATACAAAACCGTCTTTGTTCAAGAACTGCATCGGTCTAGGGTGCTTCTCCGGGC GCTCTGCTGAGACGAAATTAGTAGTTAGTAGAGATGATGATGACGAAAATGCTAGTGGATGCTCTGAACATGTGCAGCAGCAGCAGTCGTGTAACGGAGT CCAGAAGACGAGGAACTCATCTGTGCTGAGGCATTGGCGGGTGTCTGCCAACTCGAAGATCGGTGGATTCTTCAGAAATGATGGAAAGACATCAAAAGGG ACTTATAACCAAAGTGGGAAATCCTGTTCTAATAATCAGCAAAAAGCTCAGAAGATTGTACCTTTCAAGAAAAGAAAGTTCTTCGCTAGTGACGATGCAT CCGTTTGTGAAGACATATTCACTTCTCCCAACAAGAAAACCAATGATGACAGCTGTGGTTCAGCGTCGGGAACATCATCTTCGGTATCAGGCCAACATAC GCCTCCAAACTCGAGAGACTGTAATGTCAAGCTTAGTATCAAGTCGTTCAAGGTCCCGGAGCTCTTCATTGAGATTCCTGCAACAGCAACCGTCGGCTCA TTGAAGAGGATGGTAATGGAGGCAGTATCTGCCGTCCTTGGCGATGGACTACATGTTGGCATCCTGGTTCAGGGAAAGAAGGTTAGAGATGACAGCAAAA CCTTGCTTCAGACCGGAATCTCCCAAGATCATGACAAGCATAACAGTTTGGGCTTCATTTTGGAGCCCTGCCGATCTCAAATAGCATCGTCCTCGCCTTC CTGTGCCCAGAGTCCCTCGTTTCTGTTGAGCCGTTCAGCTAATGGCGCGATATCCAGGCATGCCTCATTGAAGCTACAACAAGCAGGGGGATCGAGTGGC TCCCCTGTTTCGTCGGAGATAGGTTGTGGCAGGACTGTTGGAAGTAATCCAAGCAGAGTTCTCGCACTGGGCGATGGCCGATCAAACAACAATAGAGCCA ACTTATCTGATTCGAAAGCTTTGTTGACAGTCCCAGCAGTGAGAATGGACCATGCATTGGCTGTAGTCCCTTTCCACAGGAAGTCTGGTCAGCCCGAGCT AGGACAACGCAGGATGCGAAGACCCTTTTCGGTCTCGGAAGTGGAAGCACTGGTTCAAGCAGTTGAAAAGCTCGGAACTGGAAGGTGGCGTGATGTGAAG TTGCGTGCTTTCGATAACGTGCATCATCGAACTTATGTCGATCTCAAGGATAAGTGGAAGACATTAGTGCATACAGCAAGGATATCCCCACAGCAAAGAA GAGGGGAGCCAGTGCCACAAGAACTACTGAACAGGGTTCTTGCTGCACATGCATGCTGGTCACAGCAACAGCCCAAACACCATCCCAAATCTACTGTTTG A
AA sequence Show only first row Show all	>Lus10010844 pacid=23163422 polypeptide=Lus10010844 locus=Lus10010844.g ID=Lus10010844.BGIv1.0 annot-version=v1.0 MLLTLLELADIEGYSSIFYWDQKGSSPILTAYGLKKRLLQGRGIMRKKGENSHIQAFEILASVAGKILQSGESSTKLSQGDDEGELSNPEASVEKITSPS EPGLNSYPLHEFLPAQQTYSHKGSSSSYNLDHEAENLATRDDGKMTNRTVLNKLDGWKLYQGQDESLTERKPEAAETECKVKSAESGTLPVQGDFEDKME IDMNIPACASPDENSDTKPSLFKNCIGLGCFSGRSAETKLVVSRDDDDENASGCSEHVQQQQSCNGVQKTRNSSVLRHWRVSANSKIGGFFRNDGKTSKG TYNQSGKSCSNNQQKAQKIVPFKKRKFFASDDASVCEDIFTSPNKKTNDDSCGSASGTSSSVSGQHTPPNSRDCNVKLSIKSFKVPELFIEIPATATVGS LKRMVMEAVSAVLGDGLHVGILVQGKKVRDDSKTLLQTGISQDHDKHNSLGFILEPCRSQIASSSPSCAQSPSFLLSRSANGAISRHASLKLQQAGGSSG SPVSSEIGCGRTVGSNPSRVLALGDGRSNNNRANLSDSKALLTVPAVRMDHALAVVPFHRKSGQPELGQRRMRRPFSVSEVEALVQAVEKLGTGRWRDVK LRAFDNVHHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLNRVLAAHACWSQQQPKHHPKSTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	0	1
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	2.2	0.8912
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	2.6	0.9018
AT2G31350		GLX2-5	glyoxalase 2-5 (.1.2)		Lus10018625 [exp]	5.0	0.8589
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	6.5	0.9013
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	7.3	0.8909
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	7.9	0.8849
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	9.1	0.8306
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	9.6	0.8949
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	9.8	0.8552
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	9.9	0.8537

Compare expression of checked genes

Lus10010844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.