Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37660 414 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02240 386 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G31530 86 / 5e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G34460 69 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 67 / 3e-12 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G16720 52 / 2e-07 HCF173 high chlorophyll fluorescence phenotype 173 (.1) AT1G15950 45 / 3e-05 IRX4, ATCCR1, CCR1 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024383 [exp] 507 / 0 AT2G37660 458 / 1e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022420 [exp] 82 / 3e-17 AT4G31530 415 / 4e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10009715 [exp] 80 / 6e-17 AT4G31530 408 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040884 [exp] 69 / 4e-13 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 67 / 3e-12 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 67 / 3e-12 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 66 / 1e-11 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033322 [exp] 54 / 6e-08 AT1G16720 874 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Lus10034781 [exp] 54 / 7e-08 AT1G16720 870 / 0.0 high chlorophyll fluorescence phenotype 173 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086800 [exp] 434 / 7e-154 AT2G37660 450 / 2e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G253900 [exp] 71 / 1e-13 AT4G31530 399 / 1e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G150300 [exp] 70 / 5e-13 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 69 / 1e-12 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 69 / 1e-12 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G000400 [exp] 54 / 9e-08 AT1G16720 863 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.007G003500 [exp] 52 / 4e-07 AT1G16720 852 / 0.0 high chlorophyll fluorescence phenotype 173 (.1) Potri.003G063800 [exp] 47 / 6e-06 AT1G72640 348 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G045600 [exp] 44 / 3e-05 AT1G15950 227 / 4e-75 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.004G183100 [exp] 44 / 9e-05 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01073 [flax] [poplar] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Lus10010846 pacid=23163443 polypeptide=Lus10010846 locus=Lus10010846.g ID=Lus10010846.BGIv1.0 annot-version=v1.0 ATGGCCTCGATGACGTGTCTCCCTTTGATCTCCTTCTCTGCTAAACTCGGTGGCGTGTCCTCATTACTGCCTAGTTCCAGTTGTTGCTCTACTACACTTC CAGAGTCTTCCGCATTTCCCTTCTCGCTCTCTCTGTCTACTTCTTCTCTATCGCGGACTAAAGGCAGCAGCAGAAGGGCGAGATTTGGTGTTGCGTTTGC ATCAATGGCCCCCAAGACCGTCCTCGTCACCGGAGCTGGTGGCAGAACAGGTTCAATAGTGTACAAGAAACTGAAGGAAAGGTCGGATCATTACACTGCA AGGGGTTTGGTTCGAACTCCAGAGAGTAAGGAGAAAGTTGGGGGATCTGATGATGTGTACGTTGGAGACGTAAGAGATGCTGAGAGCATTGTTCCAGCTA TTCAAGGTATTGATGCACTCGTGATACTGACAAGCGCAGTGCCTAAGATGAAACCTGGATTTGATCCCTCCAAAGGTGAAAGGCCTGAATTTTATTTTGA AGAAGGTTCCTTTCCTGAACAGGTCGACTGGATTGGACAGAAGAACCAAATAGATGCTGCCAAGGCTGCTGGAGTAAAGCAAATTGTGTTGGTTGGTTCT ATGGGTGGAACCAACCTTGATCACCCATTGAACAAATTGGGCAACGGGAACATACTGGTCTGGAAGAGAAAGGCTGAGCAATTTCTGGCTGATTCTGGTC TTCCTTACACAATCATAAGGGCTGGAGGGCTGCAAGACAAAGAAGGAGGGATTCGTGAACTTCTGATCGGGAAGGATGACGAGCTTCTTCAGACAGAGAC AAGGACCATAGCCAGGCCTGATCTTGCTGAAGTGTGCCTTCAGGCTCTCCAGTACGATGAAGCTCAGTTCAAGGCATTCGATTTGGCCTCCAAGCCGGAA GGAACAGGCACCCCAACCACCGACTTCAAGGCATTGTTCTCTCAGATAACCACCCGGTTTTGA
AA sequence Show only first row Show all	>Lus10010846 pacid=23163443 polypeptide=Lus10010846 locus=Lus10010846.g ID=Lus10010846.BGIv1.0 annot-version=v1.0 MASMTCLPLISFSAKLGGVSSLLPSSSCCSTTLPESSAFPFSLSLSTSSLSRTKGSSRRARFGVAFASMAPKTVLVTGAGGRTGSIVYKKLKERSDHYTA RGLVRTPESKEKVGGSDDVYVGDVRDAESIVPAIQGIDALVILTSAVPKMKPGFDPSKGERPEFYFEEGSFPEQVDWIGQKNQIDAAKAAGVKQIVLVGS MGGTNLDHPLNKLGNGNILVWKRKAEQFLADSGLPYTIIRAGGLQDKEGGIRELLIGKDDELLQTETRTIARPDLAEVCLQALQYDEAQFKAFDLASKPE GTGTPTTDFKALFSQITTRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10010846 [exp]	0	1
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	1.4	0.9357
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	3.0	0.9300
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Lus10018212 [exp]	3.2	0.9353
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10010557 [exp]	3.5	0.9189
AT5G28750			Bacterial sec-independent tran...		Lus10006588 [exp]	5.4	0.8803
AT3G15900			unknown protein		Lus10011486 [exp]	5.9	0.9205
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10037012 [exp]	7.5	0.9219
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10042356 [exp]	7.6	0.8668
AT4G14870		SECE1	secE/sec61-gamma protein trans...		Lus10006118 [exp]	7.7	0.8666
AT3G23760			unknown protein		Lus10043212 [exp]	13.4	0.9006

Compare expression of checked genes

Lus10010846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.