Plant FIBer expression Database

Lus10010847 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G27110 39 / 0.0008 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3)
AT1G64255 39 / 0.001 MuDR family transposase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029513
[exp]
141 / 4e-39 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
Lus10021654
[exp]
107 / 3e-29 ND /
Lus10024783
[exp]
93 / 2e-24 ND 42 / 9e-05
Lus10009722
[exp]
55 / 4e-09 AT3G20300 626 / 0.0 Protein of unknown function (DUF3537) (.1)
Lus10004363
[exp]
41 / 5e-05 AT3G03070 87 / 9e-24 NADH-ubiquinone oxidoreductase-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G158400
[exp]
42 / 7e-05 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3)
Potri.004G196300
[exp]
42 / 8e-05 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10010847 pacid=23163437 polypeptide=Lus10010847 locus=Lus10010847.g ID=Lus10010847.BGIv1.0 annot-version=v1.0
ATGTGTGAGCAAAGTTTCAATGGACAGACGCACACACTGTGGGTCTTCGATTACACAGCGGGCGAGTATGATGTGGTTAGTACTTACAAACAGAGAAACA
GAGATGGAAACCACAGATACAAGGTCTATCTAGATCATCAAAGCATGACAGGTTCATGTGCTTGTGGTATCTTCCATCACTCAAAGATTTTGTGTAGTCA
TACTTATGTTGTTTACAACACAATGCACCTCAACCCGTATAACTACGTACATCCCATCTTCAAGCTCTCCACTATTGCTCAGACAGATGCAACTAGTTTC
TGCCCCCTTGATGGACCCATAACAAAATGGACTAGAGTGAATATGTGGAGCCACATTGTACAGCATGCGGCCAAGATGGTCATAATAGAGGCCATTGTCC
GACCGTCCCACCAGCACTCATGGTTTGTCCTCAATGTCATGTGGTGGGCCATAACCGGAGGCCTTGTCCGACAACTCGAAGGACAACCCAAATCAAGGTG
GACATCATCAGCATAA
AA sequence
>Lus10010847 pacid=23163437 polypeptide=Lus10010847 locus=Lus10010847.g ID=Lus10010847.BGIv1.0 annot-version=v1.0
MCEQSFNGQTHTLWVFDYTAGEYDVVSTYKQRNRDGNHRYKVYLDHQSMTGSCACGIFHHSKILCSHTYVVYNTMHLNPYNYVHPIFKLSTIAQTDATSF
CPLDGPITKWTRVNMWSHIVQHAAKMVIIEAIVRPSHQHSWFVLNVMWWAITGGLVRQLEGQPKSRWTSSA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10010847
[exp]
0 1
Lus10021782
[exp]
6.6 0.9042
Lus10007927
[exp]
9.3 0.9042
AT2G15220 Plant basic secretory protein ... Lus10001607
[exp]
11.4 0.7751
Lus10023587
[exp]
11.4 0.9042
AT3G55780 Glycosyl hydrolase superfamily... Lus10040232
[exp]
11.7 0.6288
AT1G74670 GASA6 GA-stimulated Arabidopsis 6, G... Lus10024216
[exp]
13.1 0.9042
AT2G25470 AtRLP21 receptor like protein 21 (.1) Lus10027855
[exp]
14.7 0.9042
AT3G19540 Protein of unknown function (D... Lus10028040
[exp]
16.1 0.9042
AT4G12570 UPL5 ubiquitin protein ligase 5 (.1... Lus10039026
[exp]
17.3 0.9042
AT2G34320 Polynucleotidyl transferase, r... Lus10039942
[exp]
18.5 0.9042

Lus10010847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.