Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02230 390 / 1e-137 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59480 344 / 2e-119 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 297 / 4e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 272 / 1e-91 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G32150 231 / 3e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024382 [exp] 582 / 0 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 410 / 4e-145 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 328 / 4e-113 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 324 / 5e-111 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 321 / 3e-110 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10009256 [exp] 276 / 8e-93 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 276 / 6e-92 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10001574 [exp] 262 / 4e-85 AT5G59480 323 / 4e-109 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004914 [exp] 237 / 3e-77 AT2G32150 338 / 6e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086900 [exp] 471 / 3e-169 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 340 / 1e-116 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 317 / 2e-108 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.002G185300 [exp] 290 / 1e-97 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 285 / 5e-96 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 236 / 5e-77 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G151700 [exp] 228 / 4e-74 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010848 pacid=23163460 polypeptide=Lus10010848 locus=Lus10010848.g ID=Lus10010848.BGIv1.0 annot-version=v1.0 ATGGAATATGAGAAGTGCTACCTTCATGTCCAGAGGCCGAAATATGACTGTCTTCTATTTGACCTAGATGATACCCTTTACCCATACAGCTCTGGTCTTG CAGCATCATGCGGGAGGAACATCAAAGATTACATGGTGGAACACTTGGGCATTGACACGAACAAAATCGCCGAGTTGGGCAACCTTCTGTACAAAAACTA TGGCACGACAATGGCCGGTCTGAGGGCTATTGGCTACGATTTTGATTACGACGAGTACCATAGCTTTGTTCATGGCAAATTACCTTATGAGAACCTGAAG CCAGACCCGGTTCTCAGGAGCCTTCTGCTCAGCCTTCCATTTCGCAAAGTGATCTTTACCAATGCGGACAAAATTCATGCCCTGAAGGCCATAAACTTGC TTGGTTTAGAGGAGTGTTTCGAAGGGATAATTTGCTTTGAGACACTGAATCCCATCCACAAAACCACTGTTTCTGATGACGAGGATGATATCGCCTTTGT GGGGTCAAACTCTTCAGCCGCCACAACAACAATTACAAACAACAGCCATGAAATATTCGACATTATTGCCCATTTTAACAAATCTAATCCTAGCACTTCC GCGCTCCCCAAGTCACCCATTGTGTGCAAGCCATCTGAGGCGGCCATCGAACGCGCCCTCAATATAGCTAACATCGATCCCAAGCGAACCCTGTTCTTCG AAGATAGCGTGAGGAACATTCAATCGGGAAAACGCGTGGGACTTCATACCGTGCTGATCGGGACTTCCCAGAGGGTTAAAGGTGCGGATTATGCTTTGGA GAGCATCCACAATCTGAGGGAAGCGATTCCCGAGTTGTGGGAATTAGCCGACATTAAAACGGCGTCATCGGAAGTTGGGTATCCTGGAAAAGTTGCAGCT GAGCAGTCTGTCACAGCTTAA
AA sequence Show only first row Show all	>Lus10010848 pacid=23163460 polypeptide=Lus10010848 locus=Lus10010848.g ID=Lus10010848.BGIv1.0 annot-version=v1.0 MEYEKCYLHVQRPKYDCLLFDLDDTLYPYSSGLAASCGRNIKDYMVEHLGIDTNKIAELGNLLYKNYGTTMAGLRAIGYDFDYDEYHSFVHGKLPYENLK PDPVLRSLLLSLPFRKVIFTNADKIHALKAINLLGLEECFEGIICFETLNPIHKTTVSDDEDDIAFVGSNSSAATTTITNNSHEIFDIIAHFNKSNPSTS ALPKSPIVCKPSEAAIERALNIANIDPKRTLFFEDSVRNIQSGKRVGLHTVLIGTSQRVKGADYALESIHNLREAIPELWELADIKTASSEVGYPGKVAA EQSVTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	0	1
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	1.4	0.8563
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	5.2	0.8033
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	6.3	0.7861
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10011718 [exp]	6.9	0.7834
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	9.1	0.8034
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006784 [exp]	9.2	0.7842
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	12.0	0.7821
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	14.8	0.7919
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	16.7	0.7290
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	19.0	0.7021

Compare expression of checked genes

Lus10010848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.