Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43290 138 / 6e-40 WRKY ATWRKY49, WRKY49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) AT1G69310 97 / 5e-24 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G49520 94 / 3e-22 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 90 / 2e-21 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G18170 90 / 3e-21 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT3G01970 86 / 3e-21 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT2G47260 90 / 5e-21 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT5G46350 88 / 2e-20 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT5G13080 84 / 4e-20 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT2G46130 82 / 4e-20 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024380 [exp] 340 / 5e-119 AT5G43290 157 / 7e-47 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Lus10037785 [exp] 96 / 3e-23 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037094 [exp] 95 / 1e-22 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10036891 [exp] 95 / 1e-22 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10004537 [exp] 93 / 2e-22 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10017067 [exp] 94 / 3e-22 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10036401 [exp] 91 / 5e-22 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10007906 [exp] 89 / 2e-21 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10004612 [exp] 90 / 3e-21 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087000 [exp] 159 / 2e-47 AT5G43290 163 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.016G099900 [exp] 155 / 3e-46 AT5G43290 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 49, WRKY DNA-binding protein 49 (.1) Potri.010G160100 [exp] 99 / 8e-25 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.008G094000 [exp] 95 / 3e-23 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.008G103300 [exp] 96 / 6e-23 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.010G147700 [exp] 95 / 7e-23 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.001G352400 [exp] 91 / 2e-21 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.002G059100 [exp] 91 / 3e-21 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1) Potri.001G058800 [exp] 87 / 3e-21 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G193000 [exp] 90 / 4e-21 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10010851 pacid=23163436 polypeptide=Lus10010851 locus=Lus10010851.g ID=Lus10010851.BGIv1.0 annot-version=v1.0 ATGCAATATTCAGGCGCTACAGTTGCAGCAATCCAAGACGCTTTACCGTTGAAGACTTGGTCGATTTTGAATTCCCCATCAAGTTTGCTTGAGAGGGGAA TTAACCGAATTAACGGAAGCAAGTACACAATGAAACTCAAGTGTTTCGAGAATGGAATGGCGGATGATGGTTACAAATGGAGGAAGTATGGACAGAAGGC CATTAAGAACAGCCCTTATCCCAGGAGCTACTATAAGTGCACAAACAGAAGATGCAGCGCGAAGAAGCAAGTGGAGAGGTCGAGAGATGAACAAGACACA CTAATCATCACCTACGAAGGCCTCCATTTACACTTCGCTTACCCTTATTATTTCCCACTCAACCCTGACGACGGAGAAGATCATCATCCTCCGCCGCCGC CAAAGAGAACCAAAACAACTTCCCCTGAAGCTGAATTAGCTGAAGCTGAAGCTGAAGCAGAGCAATCCAGATTTGGAGGGGAAGAAGATGGGTTGTTTGA GATGAAGGCTGCTGATTCTTCTCAGGGGCTACTGGAAGATGTGGTTCTGCCGTTTGTGATAAGGTATCCTGCAACCGTTGATAATGTTAACAGCAGTAGT AGAACTAGTAGTAGTAACTTGTTAATTTCCAACTCTTGCTCTTCTACTTCTTCTTCATTGTCATGGTCGTCCTCGTCCCAAGACAGTGAATAG
AA sequence Show only first row Show all	>Lus10010851 pacid=23163436 polypeptide=Lus10010851 locus=Lus10010851.g ID=Lus10010851.BGIv1.0 annot-version=v1.0 MQYSGATVAAIQDALPLKTWSILNSPSSLLERGINRINGSKYTMKLKCFENGMADDGYKWRKYGQKAIKNSPYPRSYYKCTNRRCSAKKQVERSRDEQDT LIITYEGLHLHFAYPYYFPLNPDDGEDHHPPPPPKRTKTTSPEAELAEAEAEAEQSRFGGEEDGLFEMKAADSSQGLLEDVVLPFVIRYPATVDNVNSSS RTSSSNLLISNSCSSTSSSLSWSSSSQDSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10012410 [exp]	4.9	0.8920
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	5.7	0.9016
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	6.2	0.9050
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10001922 [exp]	7.9	0.8939
AT5G18940			Mo25 family protein (.1.2)		Lus10012762 [exp]	8.4	0.8894
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	10.5	0.8754
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	13.2	0.8957
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	13.6	0.8960
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	18.4	0.8841
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	18.9	0.8814

Compare expression of checked genes

Lus10010851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.