Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09320 391 / 2e-138 DHHC-type zinc finger family protein (.1) AT5G04270 213 / 2e-68 DHHC-type zinc finger family protein (.1) AT4G22750 113 / 4e-29 DHHC-type zinc finger family protein (.1.2) AT4G00840 111 / 9e-29 DHHC-type zinc finger family protein (.1) AT4G22753 111 / 2e-27 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G60800 102 / 3e-25 DHHC-type zinc finger family protein (.1) AT5G50020 92 / 4e-21 DHHC-type zinc finger family protein (.1.2) AT4G24630 89 / 4e-20 DHHC-type zinc finger family protein (.1) AT3G56930 89 / 1e-19 DHHC-type zinc finger family protein (.1.2) AT5G41060 84 / 4e-18 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024377 [exp] 548 / 0 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 265 / 1e-88 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10037973 [exp] 162 / 2e-48 AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 114 / 2e-29 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 113 / 4e-29 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 97 / 1e-23 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10002694 [exp] 97 / 8e-23 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 87 / 6e-19 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10010447 [exp] 87 / 8e-19 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087400 [exp] 429 / 3e-153 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 412 / 9e-147 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 249 / 2e-82 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 104 / 3e-26 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 104 / 4e-26 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 103 / 7e-26 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 103 / 1e-25 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 100 / 1e-24 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.006G027400 [exp] 88 / 2e-19 AT3G56930 439 / 9e-151 DHHC-type zinc finger family protein (.1.2) Potri.005G195300 [exp] 86 / 6e-19 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10010852 pacid=23163457 polypeptide=Lus10010852 locus=Lus10010852.g ID=Lus10010852.BGIv1.0 annot-version=v1.0 ATGAAGCGAGGCCTTAGCTTTTCCCTGCCGGTTACCGTCGTCCTTTTTGTGATCACCTTCGTTTACTTCTCCACCGTTTTTGTCTTTATCGATCGGTGGA TTGGTCTCATGCCCTCTCCTGGACTGATGAACGCCGTCGTCTTCACCGCCGTCGCCATCATGTCCGTCTTCAACTACTGCGCTGCCACCATGACGGATCC TGGTCGGGTCCCTTCCACGTACTTGCCGGACATCGAAGACGCCGACAACCCTATACACGAGATTAAGCGCAAGGGAGGAGATTTGAGGTATTGCCAGAAG TGTTCCCACTACAAGCCGCCACGAGCTCATCACTGCCGTGTGTGTAAAAGATGCGTTTTGCGTATGGACCATCATTGCATTTGGATAAACAATTGTGTCG GCCATGCGAACTATAAGGTCTTCTTCAACTTTGTTGTCTATGCTGTAACTGCTTGCATTTACTCCCTTGTCCTGCTTGTTGGTAGTCTGACTGTTGATCC GCAAAAGGAGGAACAGCTAAATAGCGGGTTCTTTAGAGTTATATATGTTATTTCAGCAATGTTGTTAGTTCCCTTGAGTGTGGCTTTGAGTGTTCTTTTT GGTTGGCATATCTACCTCGTTCTGCAAAACAAAACAACAATCGAGTATCATGAAGGAGTGAGGGCTATGTTGCTTGCGGAGAAAGGAGGAAATATATATA AGAATCCTTATGACATTGGTGGCTATGGCAATTTGACAGCAATACTAGGTCCAAGCATCTTTTGCTGGTTATTCCCTAAAACAAGGCACATCGGATCTGG CCTCCACTTCCAAACAGCTTATGACCACTTGAAAACTCGAGCATCCTCGAAATGA
AA sequence Show only first row Show all	>Lus10010852 pacid=23163457 polypeptide=Lus10010852 locus=Lus10010852.g ID=Lus10010852.BGIv1.0 annot-version=v1.0 MKRGLSFSLPVTVVLFVITFVYFSTVFVFIDRWIGLMPSPGLMNAVVFTAVAIMSVFNYCAATMTDPGRVPSTYLPDIEDADNPIHEIKRKGGDLRYCQK CSHYKPPRAHHCRVCKRCVLRMDHHCIWINNCVGHANYKVFFNFVVYAVTACIYSLVLLVGSLTVDPQKEEQLNSGFFRVIYVISAMLLVPLSVALSVLF GWHIYLVLQNKTTIEYHEGVRAMLLAEKGGNIYKNPYDIGGYGNLTAILGPSIFCWLFPKTRHIGSGLHFQTAYDHLKTRASSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	0	1
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	5.3	0.8296
AT1G59650		CW14	Protein of unknown function (D...		Lus10039463 [exp]	6.5	0.8155
AT2G30120			unknown protein		Lus10026389 [exp]	7.7	0.8149
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10014868 [exp]	8.5	0.7457
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	8.5	0.7869
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10013357 [exp]	14.8	0.8144
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	15.5	0.7746
AT1G06510			unknown protein		Lus10001505 [exp]	19.8	0.8042
AT1G27320		AHK3	histidine kinase 3 (.1)		Lus10037032 [exp]	19.9	0.7825
AT3G12010			unknown protein		Lus10017227 [exp]	20.5	0.8097

Compare expression of checked genes

Lus10010852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.