Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02190 293 / 8e-99 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT2G39710 276 / 2e-92 Eukaryotic aspartyl protease family protein (.1) AT5G37540 120 / 2e-32 Eukaryotic aspartyl protease family protein (.1) AT1G66180 115 / 1e-30 Eukaryotic aspartyl protease family protein (.1) AT2G03200 76 / 5e-16 Eukaryotic aspartyl protease family protein (.1) AT1G01300 67 / 4e-13 Eukaryotic aspartyl protease family protein (.1) AT1G25510 66 / 1e-12 Eukaryotic aspartyl protease family protein (.1) AT3G59080 65 / 2e-12 Eukaryotic aspartyl protease family protein (.1.2) AT5G45120 64 / 4e-12 Eukaryotic aspartyl protease family protein (.1) AT5G07030 64 / 6e-12 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024375 [exp] 397 / 8e-140 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 275 / 8e-93 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 277 / 2e-92 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10040279 [exp] 275 / 2e-92 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10004713 [exp] 273 / 9e-91 AT2G39710 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10008654 [exp] 76 / 4e-16 AT3G54400 563 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026171 [exp] 76 / 5e-16 AT5G07030 494 / 4e-174 Eukaryotic aspartyl protease family protein (.1) Lus10020759 [exp] 67 / 2e-13 AT3G59080 386 / 1e-133 Eukaryotic aspartyl protease family protein (.1.2) Lus10024148 [exp] 65 / 3e-12 AT3G54400 476 / 7e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087600 [exp] 337 / 5e-116 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.008G058000 [exp] 303 / 8e-103 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G201400 [exp] 296 / 7e-100 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 124 / 1e-33 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 118 / 3e-31 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 76 / 4e-16 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G028200 [exp] 70 / 3e-14 AT3G54400 542 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 70 / 5e-14 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.006G204700 [exp] 67 / 3e-13 AT3G52500 504 / 5e-177 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 67 / 3e-13 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010854 pacid=23163425 polypeptide=Lus10010854 locus=Lus10010854.g ID=Lus10010854.BGIv1.0 annot-version=v1.0 ATGTCGACGCCGTTACCGTACTTCGACCGGGTCGCGTACACCGTCCAGCTGGAAGGAATCAAAATCGACGACAAACTCCTCTCGGTTCCTAAATCGGTCT TCGTACCCGACCACACCGGGGCGGGTCAGACCATGGTCGACTCAGGTACGCAGTTCACCTTCCTCCTCGGACCGGCCTACGCCGCTTTGAAATCGGAGTT TCTGAACCGGACCGCTGGGATTCTCCGGGTGCTTGAGGATCCGGATTTCGTGTTCCAAGGCGCGATGGATTTGTGCTTCCGGATTCCTATCGGTCAGCGG GTCCTGCCTCGGGTACCGACGGTGAGCCTGGTGTTTGAAGGCGCGGAGATGCGGGTGGGCGGCGGAAGCGTTCTGTATCGGGTCCCGGGGGAGATTAGGG GGAAGGATTGGGTGCATTGCTTGTCGTTTGGGAATTCGGACCTGCTAGGAGTTGAAGCGTTCGTGATCGGACATCATCATCAGCAGAACGTGTGGATGGA ATTCGATCTGGAGAGGTCGAGAATCGGGCTGGCTCATGTACGGTGTGATCTAGCGGGTCAGAGATATGGGGTGGGCCTATGA
AA sequence Show only first row Show all	>Lus10010854 pacid=23163425 polypeptide=Lus10010854 locus=Lus10010854.g ID=Lus10010854.BGIv1.0 annot-version=v1.0 MSTPLPYFDRVAYTVQLEGIKIDDKLLSVPKSVFVPDHTGAGQTMVDSGTQFTFLLGPAYAALKSEFLNRTAGILRVLEDPDFVFQGAMDLCFRIPIGQR VLPRVPTVSLVFEGAEMRVGGGSVLYRVPGEIRGKDWVHCLSFGNSDLLGVEAFVIGHHHQQNVWMEFDLERSRIGLAHVRCDLAGQRYGVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02190		EMB24, ATASP38,...	PROMOTION OF CELL SURVIVAL 1, ...		Lus10010854 [exp]	0	1
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10041370 [exp]	3.2	0.8427
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	4.7	0.8661
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	9.5	0.8103
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10009126 [exp]	12.8	0.8214
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10039814 [exp]	13.9	0.7722
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	14.7	0.8045
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10014288 [exp]	19.9	0.7517
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025152 [exp]	21.2	0.7669
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	23.2	0.8198
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	25.9	0.7855

Compare expression of checked genes

Lus10010854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.