Gene [FLAX] | FIBexDB

External link

Symbol

Arabidopsis homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G46620	117 / 6e-28		zinc finger (C3HC4-type RING finger) family protein (.1)
AT5G59550	114 / 5e-27		zinc finger (C3HC4-type RING finger) family protein (.1)
AT2G39720	108 / 4e-25	RHC2A	RING-H2 finger C2A (.1)
AT3G19950	55 / 1e-07		RING/U-box superfamily protein (.1)
AT3G56580	48 / 1e-05		RING/U-box superfamily protein (.1.2.3)
AT2G40830	45 / 0.0001	RHC1A	RING-H2 finger C1A (.1.2.3)

Paralogs

Show only best Show top 10

Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10024372 [exp]	179 / 3e-50	AT5G59550	197 / 5e-60	zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10040278 [exp]	143 / 2e-38	AT5G59550	224 / 2e-71	zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10004712 [exp]	142 / 1e-36	AT5G59550	294 / 6e-97	zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10040783 [exp]	72 / 2e-13	AT5G59550	228 / 1e-72	zinc finger (C3HC4-type RING finger) family protein (.1)
Lus10010179 [exp]	58 / 5e-09	AT3G19950	285 / 6e-96	RING/U-box superfamily protein (.1)
Lus10030755 [exp]	54 / 3e-07	AT2G40830	336 / 2e-115	RING-H2 finger C1A (.1.2.3)
Lus10013235 [exp]	52 / 1e-06	AT2G40830	334 / 7e-115	RING-H2 finger C1A (.1.2.3)
Lus10024373 [exp]	0 / 1	AT5G02160	136 / 2e-42	unknown protein

Poplar homologues

Show only best Show top 10

Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G087800 [exp]	159 / 3e-43	AT5G59550	258 / 1e-83	zinc finger (C3HC4-type RING finger) family protein (.1)
Potri.009G034800 [exp]	131 / 4e-33	AT3G46620	236 / 8e-75	zinc finger (C3HC4-type RING finger) family protein (.1)
Potri.001G243300 [exp]	124 / 2e-30	AT3G46620	239 / 8e-76	zinc finger (C3HC4-type RING finger) family protein (.1)
Potri.010G201300 [exp]	124 / 3e-30	AT2G39720	240 / 2e-75	RING-H2 finger C2A (.1)
Potri.008G058100 [exp]	108 / 4e-25	AT5G59550	225 / 8e-70	zinc finger (C3HC4-type RING finger) family protein (.1)
Potri.007G074014 [exp]	59 / 3e-09	AT3G19950	278 / 5e-93	RING/U-box superfamily protein (.1)
Potri.005G090500 [exp]	57 / 2e-08	AT3G19950	279 / 4e-93	RING/U-box superfamily protein (.1)
Potri.012G036700 [exp]	57 / 3e-08	AT3G19950	273 / 5e-90	RING/U-box superfamily protein (.1)
Potri.016G029300 [exp]	52 / 1e-06	AT2G40830	317 / 9e-108	RING-H2 finger C1A (.1.2.3)
Potri.015G028400 [exp]	51 / 1e-06	AT3G19950	256 / 2e-83	RING/U-box superfamily protein (.1)

PFAM info

Representative CDS sequence

Show only first row Show all

>Lus10010856 pacid=23163452 polypeptide=Lus10010856 locus=Lus10010856.g ID=Lus10010856.BGIv1.0 annot-version=v1.0

ATGGCTTCTTCTTCCCCAACTGGATCCGCCTCTTCCTTCTGGTGCTACAGATGCAGCCGACTGTTCCACCTCCGCCTTCATTCCTCCGACGACTCCATCG

TCCTCTGCCCTGACTGCGGTGTCGGATTCGTCGAGCAGTTCATCGCCGTCTCTCCCGCCGCTGCAATGTACCAGGACAATCCGGTCAATCACGATTCTTC

CTCCTCCGCCGCATCGACCCCTAGGTACCGCCGCAACAGCCGACGGAGCGGCGGAGATCGCTCTCCTTTCAATCCCGTCATCGTCCTCCGCGGCCCTCCT

GACGGTGGCGGAAACGACACAGCTTCCTCGAATTTCGAGCTATTTTACGCCGACGGCGTCGGCTCGGGGCTTCGTCCTCTTCCAGCGAGCATGTCTGATT

TCTTAATGGGGTCTGGCTTTGACCGCTTGCTTGAACAGTTGACTCAGCTCGAAATCACCGGCCTTAATCGCTGCGACCGCCCACCGGCTTCCAAATCCGC

GATCGAATCGATGCCTATAATCAAGATCGTGTCAACCGATATTTCGATGGAGTCCACTTGCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAACCATTGCCTGTGGTGGCAGCCGTCGGAGATGTCTCCCCTGACGGCACAGTCTACCTCC

TCGCTGGCGCCGCCACCATCGCTCTGCTTGGGACTGCCTTGCCTGCGTTCTTCTCTCGCAAAGACACGTAATCTGGGGAAAGACTTTCTTGCTGCTTTGC

CCGGAGTGCGACGGTGCAGGTTTCGTACGGAAATCGGCGGCGACCCTGAGAGCAAATGCTGCAAGGAAGGATCAGGCTCAGATAGTTTTCCAGAATTGCA

ATGGGCTAGGCAAGCTCAACCAAGTCGACAAATGATCGAGCTTTTTGTACCGTAA

AA sequence

Show only first row Show all

>Lus10010856 pacid=23163452 polypeptide=Lus10010856 locus=Lus10010856.g ID=Lus10010856.BGIv1.0 annot-version=v1.0

MASSSPTGSASSFWCYRCSRLFHLRLHSSDDSIVLCPDCGVGFVEQFIAVSPAAAMYQDNPVNHDSSSSAASTPRYRRNSRRSGGDRSPFNPVIVLRGPP

DGGGNDTASSNFELFYADGVGSGLRPLPASMSDFLMGSGFDRLLEQLTQLEITGLNRCDRPPASKSAIESMPIIKIVSTDISMESTCAXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHCLWWQPSEMSPLTAQSTS

SLAPPPSLCLGLPCLRSSLAKTRNLGKDFLAALPGVRRCRFRTEIGGDPESKCCKEGSGSDSFPELQWARQAQPSRQMIELFVP

DESeq2's median of ratios [FLAX]

Coexpressed genes

Only top 10 genes are shown Show all Download tab-delimited text

Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description	Locus	MR	r
AT5G59550			zinc finger (C3HC4-type RING f...	Lus10010856 [exp]	0	1
AT4G28570			Long-chain fatty alcohol dehyd...	Lus10008239 [exp]	1.0	0.9147
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...	Lus10025060 [exp]	1.4	0.9123
AT2G47210	MYB		myb-like transcription factor ...	Lus10034713 [exp]	1.7	0.8993
AT3G23610		DSPTP1	dual specificity protein phosp...	Lus10021940 [exp]	3.5	0.8614
AT4G15545			unknown protein	Lus10012775 [exp]	4.7	0.8294
AT4G15545			unknown protein	Lus10034001 [exp]	5.3	0.8429
AT1G26850			S-adenosyl-L-methionine-depend...	Lus10008619 [exp]	5.5	0.8482
AT2G47910		CRR6	chlororespiratory reduction 6 ...	Lus10038104 [exp]	7.1	0.8603
AT1G27180			disease resistance protein (TI...	Lus10023093 [exp]	10.2	0.8126
AT1G66330			senescence-associated family p...	Lus10002290 [exp]	10.4	0.8276

Lus10010856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10010856 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10010856 coexpression network