Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02130 263 / 1e-84 NDP1 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024371 [exp] 567 / 0 AT5G02130 400 / 1e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003964 [exp] 432 / 2e-150 AT5G02130 425 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023783 [exp] 318 / 3e-104 AT5G02130 294 / 2e-94 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000114 [exp] 300 / 1e-100 AT5G02130 241 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G091400 [exp] 366 / 2e-124 AT5G02130 405 / 2e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10010858 pacid=23163462 polypeptide=Lus10010858 locus=Lus10010858.g ID=Lus10010858.BGIv1.0 annot-version=v1.0 ATGATTCGTTCAGCATTCAGGCTGTTCCGAGCGGCATCCACCGCCACTACCACGGTGGCGAGCTATGGATTCAATTCTTGTAACCTCACTGTTTTCTCCC CATTGTTTATAAGGCGGTTCCACGACAAAATCTGTGGTCCGAATGTGAACCCGGTTGCCCTACAGATGATCGACTACGCTCTCTCGTTTCCACGCTCCCA AAAATCAGATGAATCATGTAGGGAAGCTATGTTGATGCTGGAGCAGTGCCTTGCTTCTCAATCGAGTAATGATGAAGATTCCGTCGCACGGAATTCTAAG GGCATGATCTTACTCGCCATCTCCAATTTATCGTTTGAGAGGGGGAACAGGAGCGACGCCTTGGAGCAGCTACAGAGAATTCAAACATCGGACAAGGCAT CTTTGGGGGTTAGAGTTGCTGCATTGGAAGCTCTTGTTGGGGTGAACTTGGAATTGGGGAATGATGATGCTTCATCAGTGCTGGCAGATAAATGCTTAAA ACTTTTTCAGAAGGACGAGATAGCAAATACTAGTGCTGGATTTGACGTTGCAGATGCTCACGCTAAGGCGCTCAAAGGTTTCGTTGAGTTTGTTCGTGGA AATGTCAAAGCAGCTGAAGCAATGTTTGGAGGCTTACAGGGAAATCACAACTGTATTGGTGAGTATCTTACTTCGTTTTCAAACTCTCTTGCCTTCTCTA TGGTTCAATGTGGAGAAATCTTGCACGCGACACGAAATTTTGCCATGTCCGGGCAATTCTACCACAAGGTTACTGGAGTGGCTGAGAATAAAGGTTTCAC TGACAAAAGTGCCTTGGCAGCTTGCAATATGGCTTCGGATCAAGTTGAGATTGCAACCACTTGTTCCTTAGGACAGCTTCAGTCACACATGGGGAAATTT GGTGATGCGGAAGAAACATTAACCAGTGCACTAAACAAGGCAGAATCACTATACGGTGTGCACTTCAAAAAAAGGGCACTGGAGTTTCTGAAAGTTCCAC CAGTGAATTCTGAAGATGACGTAACAATGGGAGCTTGGAAGGACATTGCAGCCATTGCGAGAGCCGGATATGCAGAAGCACTTTGTGTACAAGATAACAG AAGGAGTGAAGGTGAGAAACTGAGGAGTTGGGCAGTAGCTCGATGGAGAAACAACCGGTTCTCTCGATGA
AA sequence Show only first row Show all	>Lus10010858 pacid=23163462 polypeptide=Lus10010858 locus=Lus10010858.g ID=Lus10010858.BGIv1.0 annot-version=v1.0 MIRSAFRLFRAASTATTTVASYGFNSCNLTVFSPLFIRRFHDKICGPNVNPVALQMIDYALSFPRSQKSDESCREAMLMLEQCLASQSSNDEDSVARNSK GMILLAISNLSFERGNRSDALEQLQRIQTSDKASLGVRVAALEALVGVNLELGNDDASSVLADKCLKLFQKDEIANTSAGFDVADAHAKALKGFVEFVRG NVKAAEAMFGGLQGNHNCIGEYLTSFSNSLAFSMVQCGEILHATRNFAMSGQFYHKVTGVAENKGFTDKSALAACNMASDQVEIATTCSLGQLQSHMGKF GDAEETLTSALNKAESLYGVHFKKRALEFLKVPPVNSEDDVTMGAWKDIAAIARAGYAEALCVQDNRRSEGEKLRSWAVARWRNNRFSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	0	1
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	2.0	0.7633
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Lus10014770 [exp]	4.6	0.7608
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	6.2	0.7662
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	15.2	0.7011
AT2G39580			unknown protein		Lus10029459 [exp]	16.1	0.7097
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	16.4	0.7258
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	16.6	0.6988
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	20.0	0.7569
					Lus10022247 [exp]	21.3	0.6399
AT4G24900			unknown protein		Lus10022913 [exp]	25.3	0.7209

Compare expression of checked genes

Lus10010858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.