Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43610 235 / 8e-78 Chitinase family protein (.1) AT2G43590 229 / 2e-75 Chitinase family protein (.1) AT2G43620 228 / 8e-75 Chitinase family protein (.1) AT3G54420 212 / 7e-69 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 199 / 1e-63 Chitinase family protein (.1) AT2G43570 187 / 7e-59 CHI "chitinase, putative", chitinase, putative (.1) AT1G56680 166 / 1e-50 Chitinase family protein (.1) AT3G47540 159 / 1e-48 Chitinase family protein (.1.2) AT2G43600 149 / 3e-44 Chitinase family protein (.1) AT1G02360 137 / 1e-39 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010861 [exp] 409 / 7e-147 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10024368 [exp] 399 / 6e-143 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10032794 [exp] 334 / 1e-117 AT2G43590 265 / 6e-90 Chitinase family protein (.1) Lus10003587 [exp] 332 / 1e-116 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10035624 [exp] 266 / 2e-89 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10024369 [exp] 259 / 7e-88 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003227 [exp] 258 / 2e-86 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10035621 [exp] 261 / 6e-86 AT3G54420 243 / 2e-78 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 250 / 2e-84 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G094100 [exp] 246 / 3e-82 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093900 [exp] 246 / 5e-82 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 241 / 5e-80 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 240 / 8e-80 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 240 / 1e-79 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 215 / 8e-70 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 209 / 1e-67 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 151 / 5e-45 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 150 / 3e-44 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 150 / 4e-44 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10010862 pacid=23163454 polypeptide=Lus10010862 locus=Lus10010862.g ID=Lus10010862.BGIv1.0 annot-version=v1.0 ATGGGAAAACTTCAACTTCTCACGGCCACCATACTGGCCGTATTTCTGGCCGCTGCAGTCATCCCCACAACTGTTATGGTTGATGCTGTTGCGGTGGGCA GCGTCGTCACTCCATCCTTCTTCAATGGCATCCTTAGCCAAGCCGGTACCGGATGCAAGGGTAAGCGGTTCTACACGCGTGCCTCCTTCCTCGCTGCCGC ACGTGCTTACCCTCGCTTCGGTAACCTCGACACCATCCTCTGGTCCAAGCGCGAGATCGCCGCTTTCTTTGCCCAAGTCACCCACGAAACTGGACACTTT TGCTACGTGGAAGAAATAGCTCGTGGGACATACTGTTCGCCGTCGAGCCAATACCCATGTGCTCCGGGGAAAAAGTACTACGGACGAGGGCCCATACAGC TGACGTGGAACTACAACTATGGAGCATGTGGCAAGGCTAACAACTTCAACGGACTCAAGGACCCTGACATTGTGGCTAGGAATCCTACAGTTGCGTGGAA GACGGGTTTGTGGTTCTGGATGAAGAATGTTCGCCCTGTGGTGAAACGAGGGTTTGGGGCCACCATTCGTCGCATTAATGGCGGAGAATGCAACGGCGGG AGTCCTAGGGCTGTGGCCGCTCGAGTCAAGTATTATAGAGCTTACTGCAGGGCTTTTGGGATCACTCCTGGCCCCAATATCAGTTGCTAG
AA sequence Show only first row Show all	>Lus10010862 pacid=23163454 polypeptide=Lus10010862 locus=Lus10010862.g ID=Lus10010862.BGIv1.0 annot-version=v1.0 MGKLQLLTATILAVFLAAAVIPTTVMVDAVAVGSVVTPSFFNGILSQAGTGCKGKRFYTRASFLAAARAYPRFGNLDTILWSKREIAAFFAQVTHETGHF CYVEEIARGTYCSPSSQYPCAPGKKYYGRGPIQLTWNYNYGACGKANNFNGLKDPDIVARNPTVAWKTGLWFWMKNVRPVVKRGFGATIRRINGGECNGG SPRAVAARVKYYRAYCRAFGITPGPNISC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10010862 [exp]	0	1
AT1G78780			pathogenesis-related family pr...		Lus10039018 [exp]	1.0	0.9526
AT2G43590			Chitinase family protein (.1)		Lus10010861 [exp]	4.7	0.9058
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10039813 [exp]	8.1	0.9036
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10006827 [exp]	11.8	0.8873
AT1G71740			unknown protein		Lus10029742 [exp]	15.3	0.9021
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	18.0	0.8750
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	20.3	0.8990
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	23.2	0.9029
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002888 [exp]	28.3	0.8632
AT2G20030			RING/U-box superfamily protein...		Lus10034953 [exp]	28.8	0.8927

Compare expression of checked genes

Lus10010862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.