Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54420 207 / 1e-66 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43590 201 / 1e-64 Chitinase family protein (.1) AT2G43610 195 / 7e-62 Chitinase family protein (.1) AT2G43620 189 / 2e-59 Chitinase family protein (.1) AT2G43570 186 / 1e-58 CHI "chitinase, putative", chitinase, putative (.1) AT2G43580 185 / 4e-58 Chitinase family protein (.1) AT3G47540 154 / 9e-47 Chitinase family protein (.1.2) AT1G56680 149 / 6e-44 Chitinase family protein (.1) AT3G12500 141 / 2e-40 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1) AT2G43600 139 / 2e-40 Chitinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024367 [exp] 357 / 1e-126 AT3G54420 226 / 3e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003231 [exp] 290 / 4e-100 AT3G54420 241 / 2e-80 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010866 [exp] 266 / 1e-90 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10035620 [exp] 270 / 1e-89 AT2G43590 223 / 6e-71 Chitinase family protein (.1) Lus10035618 [exp] 262 / 8e-89 AT2G43590 229 / 1e-75 Chitinase family protein (.1) Lus10010861 [exp] 261 / 1e-88 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10024366 [exp] 260 / 2e-88 AT3G54420 226 / 2e-74 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10010862 [exp] 260 / 3e-88 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10024368 [exp] 259 / 6e-88 AT2G43590 264 / 2e-89 Chitinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 239 / 3e-79 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 238 / 8e-79 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 236 / 4e-78 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 228 / 9e-75 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 215 / 7e-70 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 204 / 9e-66 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 204 / 1e-65 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.004G182000 [exp] 152 / 1e-44 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 151 / 2e-44 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.014G111800 [exp] 145 / 2e-42 AT4G01700 422 / 1e-150 Chitinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10010863 pacid=23163430 polypeptide=Lus10010863 locus=Lus10010863.g ID=Lus10010863.BGIv1.0 annot-version=v1.0 ATGGGAAAACTCCAACCCATCCTCCTCATCCTTGTCACCATAGCCATGCTTGTGGCCACCACCACAACCGTGGTGGAAGGTGCTATAGCTGACATCGTCA CCTCAGAATTCTTCAACTGCATTCGCAACCAAGCATCCAACACTTGTGCCGGAAAGACATTCTACACTCAAGAAGCCTTTCTTCAGGCCGCTGCAGTATA CCCTAGCTTCGGCAATCAAGGCGCCTTGCCCACTTCCAAGCGCGAGATCGCAGCCTTCTTCGCGCATGTCGTTCAAGAAACCGGAACTATGTCTCCTCCA TACTGCTTGTGCTACGCGGAAGAAATTAGCCGCCACACGTACTGTGATCCGAGCCCACCGTACCTATGCGAAGAAGGAAAAAGTTACTACGGGCGGGGCC CACTTCAGCTGTCGTGGAACTACAACTACAAACACGCCGGCAATGCAAATAACTTAAACGGCGTACAAGACCCGGATATCTTTGCTGGGGACCCAGTGAT TGCGTGGAAGACGGCGTTATGGTTCTGGATGACAAACGTTCGCCCCCTCTTTCCAAAAGGGTTTGGAGCCACTATCCGTAAGATTAACGGCAGCGAATGT AACGGCGGAAACAGTGCCGCCGTCCGGGTCCGGGTAAGCTACTACAACTCCTACTGCAGGAAGTTTGGGATCCCGACTGAGCGTCGCCCTGGGTGTTAA
AA sequence Show only first row Show all	>Lus10010863 pacid=23163430 polypeptide=Lus10010863 locus=Lus10010863.g ID=Lus10010863.BGIv1.0 annot-version=v1.0 MGKLQPILLILVTIAMLVATTTTVVEGAIADIVTSEFFNCIRNQASNTCAGKTFYTQEAFLQAAAVYPSFGNQGALPTSKREIAAFFAHVVQETGTMSPP YCLCYAEEISRHTYCDPSPPYLCEEGKSYYGRGPLQLSWNYNYKHAGNANNLNGVQDPDIFAGDPVIAWKTALWFWMTNVRPLFPKGFGATIRKINGSEC NGGNSAAVRVRVSYYNSYCRKFGIPTERRPGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010863 [exp]	0	1
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10009278 [exp]	1.0	0.9367
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	1.7	0.8032
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	2.4	0.8048
					Lus10033891 [exp]	2.6	0.7635
AT1G48120			hydrolases;protein serine/thre...		Lus10005957 [exp]	3.2	0.7695
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024707 [exp]	3.5	0.7901
					Lus10017806 [exp]	6.5	0.7675
AT5G16100			unknown protein		Lus10020810 [exp]	26.1	0.6280
AT3G13445		TFIID-1, TBP1	TRANSCRIPTION FACTOR IID-1, TA...		Lus10031531 [exp]	28.7	0.7157
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	30.4	0.7157

Compare expression of checked genes

Lus10010863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.